PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35371.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARF
Protein Properties Length: 583aa    MW: 65631.4 Da    PI: 5.829
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35371.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-23120220198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF   + +++ l
  KFK35371.1 120 FVKILTASDTSTHGGFSVLRKHATEClpgldmtQ--ATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RGENGDL 214
                 89**************************999543..445569************************************************..3488889 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  KFK35371.1 215 RVGVRR 220
                 ***998 PP
2Auxin_resp96.44.1e-32246325183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+stk+ F v+Y+Pr   s+F+v v+k+++a+k+ +s+G Rf+m+fe+e+s+er ++Gt+vg  dl++ +Wp SkWrsL+
  KFK35371.1 246 ASHAVSTKTLFVVFYKPRI--SQFIVGVNKYMEAMKHGFSLGIRFRMRFEGEESPERIFTGTIVGSGDLSS-QWPASKWRSLQ 325
                 789***************8..9**********************************************777.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-39106249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-38112235IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-20118220No hitNo description
SMARTSM010194.1E-21120222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083120222IPR003340B3 DNA binding domain
PfamPF023623.0E-21120220IPR003340B3 DNA binding domain
PfamPF065077.4E-30246325IPR010525Auxin response factor
PfamPF023091.2E-8467514IPR033389AUX/IAA domain
SuperFamilySSF542773.83E-12476554No hitNo description
PROSITE profilePS5174526.82478570IPR000270PB1 domain
PfamPF023097.5E-6518563IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MANDDFTSSY DDQLYIELWK ACAGPLVEVP RAEERVFYFP QGHMEQLVAS TNQGIESDQI  60
PDFNLPPKIL CRVLSVMLKA EHETDEVYAQ ITLQPEEDQS EPTSLDPPVD EPIKQVFHSF  120
VKILTASDTS THGGFSVLRK HATECLPGLD MTQATPTQEL VTRDLHGFEW RFKHIFRGQP  180
RRHLLTTGWS TFVSSKRLVA GDAFVFLRGE NGDLRVGVRR LARHQSTMPT SVISSQSMHL  240
GVLATASHAV STKTLFVVFY KPRISQFIVG VNKYMEAMKH GFSLGIRFRM RFEGEESPER  300
IFTGTIVGSG DLSSQWPASK WRSLQVQWDD TATVQRPDKV SPWEIEPVSP TSPVSTPAQQ  360
PQPKCKRSRP IELSVLTPAP PSFMYNFPQC QEPTNASSLK LFQDPSIERN NSFKAETPLP  420
PPTPASSCYR LFGIDLPSNP PAQIPQENQP IDTSSSAKCQ EPITPSSVNE QKKQQTSRTR  480
TKVQMQGIAV GRAVDLTLLK SYEELINELE KMFEIQGQLL PRDKWIVVFT DDEGDMMLAG  540
DDPWNEFCKM AKKIFIYSSD EVKKMTTKLK SSSSLESEDG NDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1651235217359Auxin response factor 1
4ldw_A1e-1651235217359Auxin response factor 1
4ldw_B1e-1651235217359Auxin response factor 1
4ldx_A1e-1651235217359Auxin response factor 1
4ldx_B1e-1651235217359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3347170.0AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0597460.0AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0704630.0AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds.
GenBankAY0913920.0AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567119.10.0auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A087GZR90.0A0A087GZR9_ARAAL; Auxin response factor
STRINGA0A087GZR90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]