PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35346.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 294aa    MW: 33051.9 Da    PI: 4.8802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35346.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-1795146156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 ++y+GVr+++ +g+++AeIrdp+    + +r++lg+f taeeAa  ++ a+  ++g+
  KFK35346.1  95 KKYRGVRQRP-WGKFAAEIRDPV----SkTRVWLGTFATAEEAAMVYDGAAIHFRGH 146
                 59********.**********64....44*********************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.0E-484281IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.84E-3095152No hitNo description
SuperFamilySSF541711.83E-2096153IPR016177DNA-binding domain
SMARTSM003809.8E-3596159IPR001471AP2/ERF domain
PfamPF008473.6E-1096146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3096152IPR001471AP2/ERF domain
PROSITE profilePS5103221.83896153IPR001471AP2/ERF domain
PRINTSPR003672.1E-1097108IPR001471AP2/ERF domain
PRINTSPR003672.1E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MERRRTRRVK LTEHRTVTNV KAKPCNDSPK VVRITVTDPY ATDSSSDDDD VINMTHRSPR  60
VKRFVEEIRF GVAPVRKGRV SKSEKGGDDV APPVKKYRGV RQRPWGKFAA EIRDPVSKTR  120
VWLGTFATAE EAAMVYDGAA IHFRGHNAQT NFLTPPPSPS SSPVTTEEKK APVYIDIETV  180
SGSDSGLESK QSLRSPTSVL RYNVNEETEH EIEPIELSPV RKLTGLEESG LFQDPDLCLA  240
GEYFWDLEIA QDPLFFDEPL QNLAIPKEEE DFSFGLIEDF GSSSWDVDSF FELG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2095152159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2095152462ATERF1
3gcc_A6e-2095152462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35346.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291551.11e-107ethylene-responsive transcription factor CRF6
SwissprotQ9M3742e-98CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A087GZP40.0A0A087GZP4_ARAAL; Uncharacterized protein
STRINGA0A087GZP40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.13e-89cytokinin response factor 6