PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28133.7 Da    PI: 5.5126
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35311.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskR+ g+lKKA+EL vLCd+eva+iifs++gklye+s+
  KFK35311.1  9 KRIENKTSRQVTFSKRKSGLLKKAYELAVLCDVEVALIIFSTSGKLYEFSN 59
                79***********************************************95 PP

2K-box90.72.6e-3081169997
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   e+ ++s++qe++kLk+++e+L r++Rhl+GedLe++s++eLq Le++Le sl+  R++K++ ++e++eel++ke++l ++nk+L+ +
  KFK35311.1  81 SLEESTQSWCQEVEKLKSKYESLLRTHRHLIGEDLEEMSVEELQTLERELEGSLSATRQRKTQAVMEEMEELRRKERQLGDINKNLKVE 169
                 456679********************************************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.842161IPR002100Transcription factor, MADS-box
CDDcd002651.89E-42277No hitNo description
SuperFamilySSF554559.68E-33287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.5E-2784169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.60386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVEMKR IENKTSRQVT FSKRKSGLLK KAYELAVLCD VEVALIIFST SGKLYEFSNP  60
GIDRTIERYY RCRGNSLENG SLEESTQSWC QEVEKLKSKY ESLLRTHRHL IGEDLEEMSV  120
EELQTLEREL EGSLSATRQR KTQAVMEEME ELRRKERQLG DINKNLKVET EGQGFNGYPW  180
LNSAATASAT TDFSLQLPHH KFLLECDVGQ FLQIGFQKRY EQLGDGSSCS RSNIVEGDCE  240
TDIVQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21169169MEF2 CHIMERA
6byy_B6e-21169169MEF2 CHIMERA
6byy_C6e-21169169MEF2 CHIMERA
6byy_D6e-21169169MEF2 CHIMERA
6bz1_A7e-21169169MEF2 CHIMERA
6bz1_B7e-21169169MEF2 CHIMERA
6bz1_C7e-21169169MEF2 CHIMERA
6bz1_D7e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00417DAPTransfer from AT3G61120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402519.11e-118agamous-like MADS-box protein AGL13
SwissprotQ388371e-113AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLA0A087GZK91e-180A0A087GZK9_ARAAL; Uncharacterized protein
STRINGA0A087GZK90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.11e-101AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]