PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK35311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28133.7 Da PI: 5.5126 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskR+ g+lKKA+EL vLCd+eva+iifs++gklye+s+ KFK35311.1 9 KRIENKTSRQVTFSKRKSGLLKKAYELAVLCDVEVALIIFSTSGKLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 90.7 | 2.6e-30 | 81 | 169 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ ++s++qe++kLk+++e+L r++Rhl+GedLe++s++eLq Le++Le sl+ R++K++ ++e++eel++ke++l ++nk+L+ + KFK35311.1 81 SLEESTQSWCQEVEKLKSKYESLLRTHRHLIGEDLEEMSVEELQTLERELEGSLSATRQRKTQAVMEEMEELRRKERQLGDINKNLKVE 169 456679********************************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.842 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.89E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 9.68E-33 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.5E-27 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.603 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGRVEMKR IENKTSRQVT FSKRKSGLLK KAYELAVLCD VEVALIIFST SGKLYEFSNP 60 GIDRTIERYY RCRGNSLENG SLEESTQSWC QEVEKLKSKY ESLLRTHRHL IGEDLEEMSV 120 EELQTLEREL EGSLSATRQR KTQAVMEEME ELRRKERQLG DINKNLKVET EGQGFNGYPW 180 LNSAATASAT TDFSLQLPHH KFLLECDVGQ FLQIGFQKRY EQLGDGSSCS RSNIVEGDCE 240 TDIVQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 7e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 7e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 7e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 7e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00417 | DAP | Transfer from AT3G61120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK35311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402519.1 | 1e-118 | agamous-like MADS-box protein AGL13 | ||||
Swissprot | Q38837 | 1e-113 | AGL13_ARATH; Agamous-like MADS-box protein AGL13 | ||||
TrEMBL | A0A087GZK9 | 1e-180 | A0A087GZK9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GZK9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4302 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61120.1 | 1e-101 | AGAMOUS-like 13 |
Publications ? help Back to Top | |||
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