PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family FAR1
Protein Properties Length: 176aa    MW: 20351.9 Da    PI: 8.3112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35300.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1872.8e-2730118189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 +fY +YA+++GF vr  + ++s  +g+i  r++ C+k+g++ +++++  +e+r+r++ r gCka++ vk+ek+gkw+vt++++eHnH+l
  KFK35300.1  30 DFYVDYARRLGFVVRLMQRRRSGIDGRILARRLGCNKQGFSPNTNQDFGTEKRSRSSAREGCKATILVKMEKSGKWVVTRFVKEHNHSL 118
                 6**********************************************9***************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2530119IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MESGDTSNEG SETSEPYVGM EFESEEEAKD FYVDYARRLG FVVRLMQRRR SGIDGRILAR  60
RLGCNKQGFS PNTNQDFGTE KRSRSSAREG CKATILVKME KSGKWVVTRF VKEHNHSLLF  120
SSSSPYNSMD DKDNKIKELI EEVEFQDGLC VQYRDKLDRF RIIRIFVPRL QNCTPA
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557750.11e-73PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
SwissprotQ9SZL82e-24FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A087GZJ81e-128A0A087GZJ8_ARAAL; Uncharacterized protein
STRINGA0A087GZJ81e-129(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.11e-67FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]