PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK35300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 20351.9 Da PI: 8.3112 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87 | 2.8e-27 | 30 | 118 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF vr + ++s +g+i r++ C+k+g++ +++++ +e+r+r++ r gCka++ vk+ek+gkw+vt++++eHnH+l KFK35300.1 30 DFYVDYARRLGFVVRLMQRRRSGIDGRILARRLGCNKQGFSPNTNQDFGTEKRSRSSAREGCKATILVKMEKSGKWVVTRFVKEHNHSL 118 6**********************************************9***************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-25 | 30 | 119 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MESGDTSNEG SETSEPYVGM EFESEEEAKD FYVDYARRLG FVVRLMQRRR SGIDGRILAR 60 RLGCNKQGFS PNTNQDFGTE KRSRSSAREG CKATILVKME KSGKWVVTRF VKEHNHSLLF 120 SSSSPYNSMD DKDNKIKELI EEVEFQDGLC VQYRDKLDRF RIIRIFVPRL QNCTPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK35300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557750.1 | 1e-73 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Swissprot | Q9SZL8 | 2e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A087GZJ8 | 1e-128 | A0A087GZJ8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GZJ8 | 1e-129 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-67 | FAR1 family protein |
Publications ? help Back to Top | |||
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