PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35258.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 229aa    MW: 25464.3 Da    PI: 6.5066
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35258.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18149183135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  KFK35258.1 149 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 183
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-761228IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.28E-14142205No hitNo description
SMARTSM004011.1E-16143193IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.398143179IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13147181IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.00E-14148195No hitNo description
PfamPF003206.0E-16149183IPR000679Zinc finger, GATA-type
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDVYGVDDLF DFSNEEIFSS SSSTVTSGSS AASTEKNLYN SGYFHTSPPL PPSLINDFTH  60
DLCVPSDDAA HLEWLSRFVD DSFSDYPTNP LPTAVKPEIS FTGKPRSRRS RLPSVSVVGT  120
WAPMPESELC EPKREYGVES VDGGEVRRCT HCASEKTPQW RTGPLGPKTL CNACGVRFKS  180
GRLVPEYRPA SSPTFVLTQH SNSHRKVMEL RRQKEQRESS SLQIPPFQS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402573.11e-108GATA transcription factor 4
SwissprotO497431e-107GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A087GZF61e-168A0A087GZF6_ARAAL; GATA transcription factor
STRINGA0A087GZF61e-169(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-99GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]