PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35066.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 338aa    MW: 38516.8 Da    PI: 5.8782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35066.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-14132178354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riNs +++Lr++lP+      +K +Ka+ L ++++++k+L
  KFK35066.1 132 KSHSEAERRRRERINSHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 178
                 79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-12132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14133188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14133188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-4142181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DPFLLHHHPQ ILPWSSIPSF DPTHFPSYPT RFPDPAHYFN  60
RRASSSSSSF DYTEGFVSPP PSMDHHQNHL RILSEALGPI MRRGSSFGFD GEIMGKMSAQ  120
EVMDAKALAA SKSHSEAERR RRERINSHLA KLRSILPNTT KTDKASLLAE VIQHMKELKR  180
QTSLISDTCQ VPTESDDLTV DSSYNDEEGN LVIRASFCCQ DRTDLMHDVI NALKSLRLRT  240
IKAEIATVGG RVMNVLFLSR EDEQEDDDDA YRGNFDGDDD NEEKRHNRVS SIEEALKAVI  300
EKCVNNNDES NDNNNLEKSS SGSIKRQRTS KMVNRCYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882201.10.0LOW QUALITY PROTEIN: transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A087GYW40.0A0A087GYW4_ARAAL; Transcription factor bhlh30
STRINGA0A087GYW40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]