PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35065.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

G2-like

Protein Properties

Length: 357aa MW: 40559.1 Da PI: 6.3794

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35065.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.7e-32	201	256	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+ KFK35065.1 201 KQRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKIDGLTNDEVKSHLQKYRLH 256 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.493	198	258	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-28	199	259	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.05E-17	199	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-27	201	256	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	203	254	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MKNYNQKRER CCEYIEALEE ERRKINVFQR ELPLCLELVT QAIEAYKKEI SETTMENICG 60 QSECSEQTTG ECGPVLDLFI PIKHCSTSIE EENEEDDDDD EHESHETDID FNDKSMKSEW 120 LKYVQLWNQP DTVLSDKEGS QHEIGRVVEA IKRNDGAAFH QTPCSETSNE KNEEGKSPTT 180 INGGDQKKEA EKDYGRRGQR KQRRCWSQEL HRRFLNALKQ LGGPHVATPK QIRELMKIDG 240 LTNDEVKSHL QKYRLHTRRP SQTTPNNNNS QTQHFVVVGG IWVPQSNHST ANAATTGGTT 300 TGIYGPIVSP LLSDWPSHSN IGRTITEEGS NKRIIRCSSP AMSSSTRIIK MKNAKIS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MKNYNQKRER CCEYIEALEE ERRKINVFQR ELPLCLELVT QAIEAYKKEI SETTMENICG  60
QSECSEQTTG ECGPVLDLFI PIKHCSTSIE EENEEDDDDD EHESHETDID FNDKSMKSEW  120
LKYVQLWNQP DTVLSDKEGS QHEIGRVVEA IKRNDGAAFH QTPCSETSNE KNEEGKSPTT  180
INGGDQKKEA EKDYGRRGQR KQRRCWSQEL HRRFLNALKQ LGGPHVATPK QIRELMKIDG  240
LTNDEVKSHL QKYRLHTRRP SQTTPNNNNS QTQHFVVVGG IWVPQSNHST ANAATTGGTT  300
TGIYGPIVSP LLSDWPSHSN IGRTITEEGS NKRIIRCSSP AMSSSTRIIK MKNAKIS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35065.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085570	1e-85	AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647535.1	1e-176	transcription factor HHO1-like
Swissprot	Q9LS00	1e-162	HHO1_ARATH; Transcription factor HHO1
TrEMBL	A0A087GYW3	0.0	A0A087GYW3_ARAAL; Uncharacterized protein
STRING	A0A087GYW3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-132	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]