PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK35020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 605aa MW: 68221.5 Da PI: 9.0635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.2e-14 | 15 | 68 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 + W+t+E++ll++av+++G+++W+++a +++ +++t+ +c++++++++ KFK35020.1 15 QTWSTWEELLLACAVHRHGTNSWDSVAVEIQkrnstlhNTLTAFDCRHKYHNLK 68 68**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-6 | 13 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-9 | 13 | 70 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.411 | 13 | 68 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.9E-7 | 13 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-14 | 15 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-8 | 16 | 68 | No hit | No description |
SMART | SM00297 | 2.9E-9 | 230 | 341 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.24E-14 | 240 | 336 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.94E-12 | 241 | 336 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 1.3E-12 | 244 | 339 | IPR001487 | Bromodomain |
Pfam | PF00439 | 3.6E-9 | 247 | 326 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 11.767 | 249 | 322 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.3E-12 | 407 | 415 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 605 aa Download sequence Send to blast |
MAKPENSKTC PEKQQTWSTW EELLLACAVH RHGTNSWDSV AVEIQKRNST LHNTLTAFDC 60 RHKYHNLKQR FSPESDDGET ISEISSVPWL DELRKLRVDE LRRELERYDL SISSLQSKVE 120 RLEEEREKSL KETIPDLDKI EPDPTRTGSE NVNRDRKIIE PVNEEPNRIG EDSCRGSCES 180 VEKESKEVND SPEFIDESKE TSDVQSSASL SRKETTIEQN QMDNVDQSLT VDKIFVESRP 240 LIDFIEILQS HPIGSHFSRR LQNQLQETLE YEKIIKQHLD FEMIRTRVEE GYYGSSKSKF 300 FRDLLLLINN VSVFYGEGTS EFVSAKQLNQ LIKKEMMMSV KIPKQTSTLK EECLVTSKEE 360 VTTVSSLKPK MPVPIIACRK RSSVAGRSSV SVNEPFKKKT KIVPTVDEKQ VSEDEEEEEE 420 EISDKDEEPI VSKKMVKGRT TSTAKKVESR NVKTSLNAGL SSKGRTSNDS SEQKKSDQEK 480 KGNNANSGSK KQSVATFLKR MKGVSSTETV IETVKGDSSN GKRGVEQRKS NSKNDKVDAG 540 KQLAGQKRST GKKATTEKGS PAKKNTSTAS KKGPAPFTPM VAKRGSEASE KEVGSSNRPK 600 KRSRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK35020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879681.1 | 0.0 | uncharacterized protein LOC9312517 isoform X1 | ||||
TrEMBL | A0A087GYR8 | 0.0 | A0A087GYR8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GYR8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6530 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57980.1 | 0.0 | DNA-binding bromodomain-containing protein |