PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35018.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 357aa    MW: 39144.8 Da    PI: 6.6506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35018.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09189236455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  KFK35018.1 189 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 236
                 8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15183254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.75E-9183240No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15185253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDLSRGFGAR SGGVVPCREA TGLAPPPLLP PENAGSFTAL LELPATQAVE LLHFTDSSSS  60
QVVAPPPPLH SFGALPFPCN SVLMERAARY SVIATEVQNG NGSCETPTSS VPSNSSANLD  120
RVKTEPTETD SAMENNHSPR PSSQNNRSGK RKEFEKKGKS STKKNKSSEE NEKLPYVHVR  180
ARRGQATDSH SLAERARREK INARMKLLQE LVPGCDKIQG TALVLDEIIN HVQSLQRQVE  240
MLSMRLAAVN PRIDFNLDNI LASENGSLMD GSFNGTPMQL AWPHQVIETE QSYHHRQLQP  300
PPPPQPQQWP FDGLNQPVWG REEDQAHGND HNSLMGVSEN LMVGSANLHP NQVKTEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397730.0AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030370.0BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850745.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A087GYR60.0A0A087GYR6_ARAAL; Uncharacterized protein
STRINGA0A087GYR60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-171bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]