PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35005.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 253aa    MW: 28525.6 Da    PI: 4.8738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35005.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-202677156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  KFK35005.1 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77
                68*****999.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.92E-312686No hitNo description
PfamPF008473.5E-142677IPR001471AP2/ERF domain
SMARTSM003806.1E-362790IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-302785IPR001471AP2/ERF domain
PROSITE profilePS5103223.2612784IPR001471AP2/ERF domain
PRINTSPR003672.8E-102839IPR001471AP2/ERF domain
PRINTSPR003672.8E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEKSTSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGHDAY LNLPHLQRKP GPSPSNSQRF KWQKLEELKK TGLLSQSYSS  120
SSSSTESKAN NTSLFDEKTS KGETEKMVEG DDDDQKKPEI DLTEFLQQLG ILKDESHQAE  180
ASEVAECHST PPWNEQEETG SPFGAQSFSW DTLIEMPRSE TATMQFDSSS FGIFDFEDDL  240
AFPSIWNFCG SLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-182784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272171e-125AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04.
GenBankAL0496601e-125AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8.
GenBankAY0872431e-125AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence.
GenBankBT0289451e-125BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds.
GenBankCP0026861e-125CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291644.11e-143dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-138DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A087GYQ30.0A0A087GYQ3_ARAAL; Uncharacterized protein
STRINGA0A087GYQ30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-126ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]