PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK34915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 21188.1 Da PI: 7.0314 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4e-12 | 51 | 97 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riNs ++ Lr llP + K +Ka+ L k+v+ +k+L KFK34915.1 51 RNHKEAERKRRARINSHLSMLRNLLPCN-----SKTDKATLLAKVVQRVKEL 97 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.034 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.50E-12 | 51 | 100 | No hit | No description |
Pfam | PF00010 | 9.3E-10 | 51 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-13 | 51 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-14 | 51 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-11 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.14E-4 | 130 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MQQEISDQIF SSFLTRGFCS SSTTTTTTSS FYPSIIEEDT ISQDKALAAL RNHKEAERKR 60 RARINSHLSM LRNLLPCNSK TDKATLLAKV VQRVKELKQQ TLELSNESLP SETDEFSVLN 120 FDNGRTIFKV LFCCEDRPDL MQDLVETLKS LKMKTLYADM STIGGRTRNV LIVAADKEHH 180 GDDSHLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK34915.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL390921 | 2e-37 | AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16. | |||
GenBank | CP002686 | 2e-37 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002878108.1 | 3e-87 | putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 3e-86 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A087GYG3 | 1e-135 | A0A087GYG3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GYG3 | 1e-136 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 5e-87 | bHLH family protein |
Publications ? help Back to Top | |||
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