PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34607.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 265aa    MW: 30661.4 Da    PI: 4.7294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34607.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-115799754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  Er+RR+++N++++ Lr+++P+      +Kl+Ka++ +  ++Y+++L
  KFK34607.1 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 99
                57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0445099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-105399No hitNo description
SuperFamilySSF474591.44E-1655124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1656118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDLEDEYKN YWETTMFFHN QELEFDSWPL EEAFSGSGES SSPDGTAMSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASVIK DSIDYMQELI EQEKRLEAEI KELESQSTLL  120
EYPIRDYDCF NNNAENHQQN FSEINKVMRS KKCKQIDYNT FESSNITRVH NHSPIEVLEM  180
KVTWMGEKTV VVCITCSKRR DTMLQLCKVL ESLNLNILTT NFSSFASRLS STLFLQAGED  240
ERNTIEAKIQ TAIAAYNDQN CLLNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304821e-142AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412786.21e-163transcription factor bHLH27
SwissprotQ700E31e-135BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A087GXK50.0A0A087GXK5_ARAAL; Uncharacterized protein
STRINGA0A087GXK50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-147bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]