PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 154aa    MW: 17308.8 Da    PI: 10.0089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34280.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-181968255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  KFK34280.1 19 QYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 68
                69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-301877IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-211977IPR016177DNA-binding domain
PROSITE profilePS5103223.091976IPR001471AP2/ERF domain
PfamPF008474.6E-121968IPR001471AP2/ERF domain
CDDcd000181.03E-271978No hitNo description
SMARTSM003802.5E-371982IPR001471AP2/ERF domain
PRINTSPR003676.6E-92031IPR001471AP2/ERF domain
PRINTSPR003676.6E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDDRAGATDV AGSRKRERQY KGIRMRKWGK WVAEIREPNK RSRLWLGSYS TPEAAARAYD  60
TAVFYLRGPT ATLNFPELLP CTEKFVALDM SAAMIRKKAT EVGAQVDAIE TVVKNNKCRR  120
VISQKGSYDG GVLERVDLNK LPDPENPDND FVGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-161876463ATERF1
3gcc_A6e-161876463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880975.12e-80ethylene-responsive transcription factor ERF011
SwissprotQ9SNE13e-80ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A087GWM81e-110A0A087GWM8_ARAAL; Uncharacterized protein
STRINGA0A087GWM81e-110(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.11e-82cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]