PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK34231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 51124.7 Da PI: 5.836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+G+rF+Ptdeelv +yL +k++g++ ++ ++i+e+di+k+ePwdLp + +k++++ew fF++ d+ky+tg+r+nrat +gyWkatgkd++++s+k+ KFK34231.1 13 LPVGLRFRPTDEELVRFYLGRKINGHDDDV-KAIREIDICKWEPWDLPdlSVIKTKDSEWLFFCPLDRKYPTGSRQNRATIAGYWKATGKDRKIKSAKK 110 799************************999.89**************96448889999***************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+k+tLvf++grapkg++t+Wvmheyr+ KFK34231.1 111 NIIGVKRTLVFHSGRAPKGTRTNWVMHEYRA 141 *****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-56 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.345 | 13 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MNQNIEILSL DSLPVGLRFR PTDEELVRFY LGRKINGHDD DVKAIREIDI CKWEPWDLPD 60 LSVIKTKDSE WLFFCPLDRK YPTGSRQNRA TIAGYWKATG KDRKIKSAKK NIIGVKRTLV 120 FHSGRAPKGT RTNWVMHEYR ATENDLSGTN PGQSPFVICK LFKKQELNLA EEDSKSDEAE 180 PEPAGSSPTL EVSAVTKTED VKRYDIAESS LAISGDFPSD ACNEAELVDF GWSSEFESLD 240 YKMFSPLHSQ VQSELGSSYN AFQSTSTVFS GNSFQIQTQY SKDEVDTCIS EFLDSILVNS 300 EEVPDKYVLQ SGFDGGVPDQ IAPAYQQSTI VDMSNDVSET GIKLKTRQAQ PSGCTSDYIM 360 HGNASRRLRL QSNLNGINSK YPELQTIKRE VDDNTVGETM KKGCGKLMRS KNKTGFLFKK 420 IVSVKCSYGG LLRAAIVAVL FLMSVCSLTA DFRASVMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-47 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-47 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK34231.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877683.1 | 0.0 | NAC domain-containing protein 62 | ||||
Swissprot | Q9SCK6 | 0.0 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | A0A087GWH9 | 0.0 | A0A087GWH9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GWH9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 0.0 | NAC domain containing protein 62 |
Publications ? help Back to Top | |||
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