PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34156.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 527aa    MW: 60192.5 Da    PI: 9.3382
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34156.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.5e-15693196
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                ffk l     + ++ l++p  f+ ++ +g + e+++ +l++  s   Wevk+  +  +++  lt GWkeF+ a++L++gD+ vF+ ++++ f  +v++
  KFK34156.1  6 FFKPL--LPDFHNH-LTIPDAFFLKYiQGRN-EQTMAKLRSdASKVIWEVKV--EEDGQK--LTHGWKEFALAHDLRVGDIAVFRKERDMAF--HVTL 93
                66777..5667776.***********85444.556888888588899*****..777766..9**********************7777888..6665 PP
2B371.79.2e-23143234599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++ +l+ + l++p +f+++++++ +++ +++l++e+g+sW++ l+ +kk g+++++ GW++F++angLk+gD+++Fkl++ +e+++v+++ r+
  KFK34156.1 143 NVSPAALRYDTLYFPTTFTRANSLDARCG-EIVLMNERGKSWTLALT-QKKNGSFFIRLGWRSFCRANGLKAGDSFTFKLIQ-REGTPVLRLSRT 234
                 5677888999*************998887.****************4.666678***************************9.566699888775 PP
3B367.51.8e-21283373698
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +++ +l+ + l lp++f++++g++++ + +++l++e+g+sW++ l+ + + +++++++GW++F++angLk+g f +Fkl+  +++++v+++++
  KFK34156.1 283 VSPATLRYDKLNLPRPFVRANGLDTRIG-EVVLMNEKGKSWTLDLKGNISCETVYIRRGWRSFCHANGLKAGGFYTFKLIL-RGGTPVLRLLS 373
                 5677888999**************9998.****************99999*9**************************997.57778888776 PP
4B355.78.7e-18425520198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f++ + ++++lk+++l lp  f++ hg+++e  +++tl d++g  W+ +l+ +k ++r+ l +GWkeF kan +k+g+ v F+l++++++++v+k+++
  KFK34156.1 425 FVTLTHTPNNLKKSILFLPVLFTRMHGINEE--TKMTLLDKNGVNWSTNLRGEKVGDRIRLVGGWKEFFKANSVKTGEWVDFELIWKEDTSCVLKFCS 520
                 6667778999*****************9954..58***************99999999******************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.321397IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-173104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-204109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-13694No hitNo description
SMARTSM010199.0E-18697IPR003340B3 DNA binding domain
PfamPF023621.3E-10790IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-21132232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-20137237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.694139235IPR003340B3 DNA binding domain
CDDcd100174.55E-18139231No hitNo description
SMARTSM010197.0E-28140235IPR003340B3 DNA binding domain
PfamPF023628.9E-22142233IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-20271369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16277372IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.383278375IPR003340B3 DNA binding domain
CDDcd100177.27E-18278372No hitNo description
SMARTSM010191.6E-28279375IPR003340B3 DNA binding domain
PfamPF023626.3E-20282373IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-19417519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19419519IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-15425519No hitNo description
PfamPF023624.4E-16425520IPR003340B3 DNA binding domain
SMARTSM010198.3E-20425522IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437425522IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MANKNFFKPL LPDFHNHLTI PDAFFLKYIQ GRNEQTMAKL RSDASKVIWE VKVEEDGQKL  60
THGWKEFALA HDLRVGDIAV FRKERDMAFH VTLLGPIHCE IQYESCLDDQ KNLGIIQRRK  120
KVRKNTRREA ESSSLDPSCF VANVSPAALR YDTLYFPTTF TRANSLDARC GEIVLMNERG  180
KSWTLALTQK KNGSFFIRLG WRSFCRANGL KAGDSFTFKL IQREGTPVLR LSRTESEEES  240
SEGDETESES DEVSNLEKIQ GKKNRQKRAE SSSLDPSCFI ANVSPATLRY DKLNLPRPFV  300
RANGLDTRIG EVVLMNEKGK SWTLDLKGNI SCETVYIRRG WRSFCHANGL KAGGFYTFKL  360
ILRGGTPVLR LLSEESNEEE CSEGDKNVSL STESESDEES NQEEKGFKKR RSIWKASSSR  420
SQNRFVTLTH TPNNLKKSIL FLPVLFTRMH GINEETKMTL LDKNGVNWST NLRGEKVGDR  480
IRLVGGWKEF FKANSVKTGE WVDFELIWKE DTSCVLKFCS IVKPMTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123QRRKKVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632077.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A087GWA40.0A0A087GWA4_ARAAL; Uncharacterized protein
STRINGA0A087GWA40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]