PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34147.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 425aa    MW: 47001.9 Da    PI: 6.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34147.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-1090114327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  e C+f++r+G Ck+G++CkF+H+p
  KFK34147.1  90 AEDCSFYMRNGCCKFGSTCKFNHPP 114
                 689********************97 PP
2zf-CCCH291.9e-09140160525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  C++++ tG Ck+G++C+F H
  KFK34147.1 140 DCKYYFMTGGCKFGETCRFKH 160
                 5******************** PP
3zf-CCCH42.21.3e-13184207326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C++++rtG CkyG+ CkF+H+
  KFK34147.1 184 EIECPYYMRTGSCKYGADCKFNHP 207
                 568********************9 PP
4zf-CCCH19.12.3e-06325350227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+ +++tG Cky  +Ck++H++
  KFK34147.1 325 DQPECSQYLKTGDCKYKFTCKYHHPK 350
                 689*********************96 PP
5zf-CCCH34.34.1e-11371395226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++ +C +++r+G+Ck+G+ C+F H+
  KFK34147.1 371 DQDICTHYSRYGICKFGPACSFDHS 395
                 6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.24E-686115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.31987115IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-687114IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-790114IPR000571Zinc finger, CCCH-type
SMARTSM003560.019135162IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-7140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056140163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5140163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544181209IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-7181208IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11184207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6185208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5187206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.033323351IPR000571Zinc finger, CCCH-type
SMARTSM003560.73323350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6367395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732369397IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4369396IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8371395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4373396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MANTEEGISG SIADPASRSS DPSADRSLSD LNHVAEELSE EFKNVGLVQV NVFESNGGVD  60
STRVDGDGDS GWGESKSEKR EVVYPVRPGA EDCSFYMRNG CCKFGSTCKF NHPPPKKIQI  120
VRVNKVREKE EDVDEQGLLD CKYYFMTGGC KFGETCRFKH TKPKTFQSSV PELNFLGLPI  180
RPGEIECPYY MRTGSCKYGA DCKFNHPDPA TVGGTDSPSY HGNNGGSIGS FSPKSTFQAS  240
STSWSSPRHS NGTSPFIPTM LSQTHRVPSQ TPEWNGYQVA SVYSSERSVF KPSSTYFTNN  300
SLAETNIFSP YQHQMPAEEF PERPDQPECS QYLKTGDCKY KFTCKYHHPK NRLPKQPPYA  360
LNDKGLPLRP DQDICTHYSR YGICKFGPAC SFDHSVQPSY STGSSQAVVE PPQVGANGNE  420
SDGWN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880366.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A087GW950.0A0A087GW95_ARAAL; Uncharacterized protein
STRINGA0A087GW950.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]