PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK34110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 384aa MW: 43410.4 Da PI: 7.4133 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.7 | 9.6e-24 | 19 | 84 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ ++v l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg KFK34110.1 19 RKQKSLGLLCTNFLALYNREGIETVGLDDAATKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 84 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 79.9 | 2.3e-25 | 152 | 232 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k++++w g KFK34110.1 152 RREKSLGLLTQNFIKLFVCSEARIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtldSRKPAFKWLG 232 689**************************************999************************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-26 | 15 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.66E-16 | 18 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.0E-29 | 19 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.4E-21 | 20 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.2E-23 | 149 | 233 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-32 | 152 | 232 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.2E-20 | 154 | 232 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.74E-14 | 154 | 233 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MALSSPPESS SSLHHSYSRK QKSLGLLCTN FLALYNREGI ETVGLDDAAT KLGVERRRIY 60 DIVNVLESVG VLTRRAKNQY TWKGFDAIPA ALKELQEEGA KDTFHRFYTN ENVKVSDDED 120 DDEESSQPSS QTDSSKAGSL PQTSDSSKID NRREKSLGLL TQNFIKLFVC SEARIISLDE 180 AAKLLLGDAH NTSIMRTKVR RLYDIANVLS SMNLIEKTHT LDSRKPAFKW LGYNGEPTFT 240 FTLSNDLMQA ESRKRVFGTD ITNVNVKRSK THENAASERT LKMKKHAVEE SSCNKSFDTT 300 HESRHGSRGY QFGPFAPATG TYPTATLDDN SRRAFDVENL VSDYRPSYQN QVLKDLFAHY 360 MDAWKEWYSE VTKKDPLPNT SPHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-41 | 18 | 224 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK34110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353197 | 0.0 | AK353197.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404291.1 | 0.0 | E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 0.0 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A087GW58 | 0.0 | A0A087GW58_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GW57 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 0.0 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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