PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK33878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27535.1 Da PI: 6.0641 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.5 | 5e-40 | 6 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ ++++ ++w fF++r++++a+g r++r+t sgyWkatg+ +v+s KFK33878.1 6 LPVGFRFYPTEVELLSFYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageWCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSP 104 79****************************999***************646654455788*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ KFK33878.1 105 ENRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 *******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-44 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.423 | 6 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-19 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEEQELPVGF RFYPTEVELL SFYLRIQLGG GNATIHSLIP ILDVFSVEPT QLPNLAGEWC 60 RGDAEQWIFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSPENRVIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE AASVSTIPKL RNEFSLCRIY IKSGSSRAFD RRPMEAYGIE 180 RKLPIDRVET SFPATISTSP ETPYYSSGDQ VDLPVVNATT TQSNSEMVDG LSQPFWDWEQ 240 LNWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-34 | 1 | 167 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-34 | 1 | 167 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-34 | 1 | 167 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-34 | 1 | 167 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-34 | 1 | 167 | 12 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-34 | 1 | 167 | 12 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK33878.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138641 | 7e-96 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. | |||
GenBank | CP002686 | 7e-96 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118771.1 | 1e-148 | NAC domain containing protein 61 | ||||
Swissprot | Q9M290 | 1e-136 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A087GVH6 | 1e-180 | A0A087GVH6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GVH6 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-140 | NAC domain containing protein 61 |