PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33874.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 339aa    MW: 38369.6 Da    PI: 5.0035
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33874.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.44.2e-47191442128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGf+F+Ptd el+++yLk k++g +  + e+i+evdiy++ePwdLp +++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++ +
  KFK33874.1  19 FPGFKFSPTDIELISYYLKLKIDGLERYV-EIIPEVDIYNFEPWDLPdTSIVKSDNEWFFFCARGKKYPHGSQNKRATKIGYWKATGKERNVKS-GSDV 115
                 59************************888.89***************767778899**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf+ grapkg +t+W+mhey +
  KFK33874.1 116 IGTKRTLVFHIGRAPKGGRTEWIMHEYCM 144
                 ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5112159IPR003441NAC domain
PROSITE profilePS5100550.25818160IPR003441NAC domain
PfamPF023651.4E-2320143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MATEAARDIS VPTAVSMTFP GFKFSPTDIE LISYYLKLKI DGLERYVEII PEVDIYNFEP  60
WDLPDTSIVK SDNEWFFFCA RGKKYPHGSQ NKRATKIGYW KATGKERNVK SGSDVIGTKR  120
TLVFHIGRAP KGGRTEWIMH EYCMIGVSLD ALVICRLRKN TEFQGAAIRK PPQPSSSPDK  180
HVNSQNEAMS DNISDWENMV DFYLSSESGQ EQLSEIAESS QSSQNPQVPS EEDFYAEILR  240
DDIVKLDDPT MSGNTLINVP RLQSESTTTR VLPLPSMVDK QMQSLLQRLP LQNDIGEENN  300
ISMSSCFIGI YSIKSINRAR WDVIAWVLVM IGVLVFYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-392015717165Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33874.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292920.10.0NAC domain-containing protein 60 isoform X2
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A087GVH20.0A0A087GVH2_ARAAL; Uncharacterized protein
STRINGA0A087GVH20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]