PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK33772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30650.6 Da PI: 10.1595 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ KFK33772.1 22 RGHWKISEDSQLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 67 799*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 75 | 118 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ + KFK33772.1 75 RAFSDEEEERLLTAHRAFGNK-WSMIAKLFN-GRTDNALKNHWHVL 118 689******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.355 | 17 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 22 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.64E-27 | 22 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-10 | 25 | 66 | No hit | No description |
PROSITE profile | PS51294 | 25.156 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-9 | 76 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 76 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MQKESEVSKK TKKKSGFRVC SRGHWKISED SQLMELVAVY GPQNWNHIAE KMQGRTGKSC 60 RLRWFNQLDP RINKRAFSDE EEERLLTAHR AFGNKWSMIA KLFNGRTDNA LKNHWHVLMA 120 RQLKQQSSSF IRRSNGSSQN PIADHKSYNL PLGTVNDEDM NFKKHSWKML EEGTTNLKAQ 180 YLQEEHCSSR MPMQGPHHHC STFPADSLAL TLHVSIHKPP SSSSSSSSSL SSLSLPSTSD 240 NTMVTRYFET MKPPAFIDFL GVGHQSSNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-30 | 22 | 123 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK33772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF272732 | 1e-119 | AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395314.1 | 1e-145 | transcription factor MYB117 | ||||
TrEMBL | A0A087GV70 | 0.0 | A0A087GV70_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GV70 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-133 | myb domain protein 110 |