PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33764.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ZF-HD
Protein Properties Length: 304aa    MW: 33293.8 Da    PI: 8.4222
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33764.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.31.1e-344299359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaAC+CHRnFHRr++++
   KFK33764.1 42 TVTYKECLKNHAAAIGGHALDGCGEFMPSPTSTpTDPTSLKCAACNCHRNFHRRDPDD 99
                 799*****************************99********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-174399IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-284397IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-314496IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4534596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.36E-18175244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28176244IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-25184241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDIMTPKSPE PESETPTRIQ PAKPISFSNG TIKRHHHHHQ ITVTYKECLK NHAAAIGGHA  60
LDGCGEFMPS PTSTPTDPTS LKCAACNCHR NFHRRDPDDS STVLPPPILP PTAAIEYQPH  120
HRHHPPPPPP PPPLTRSPNS SSPPPISSSY MLLALSGTNK TVGNNIPFSD LNFSTTHHHN  180
PSSRKRFRTK FSQNQKEKMH EFADRIGWKI QKRDEDDVRD FCRQIGVDKS VLKVWMHNNK  240
NNNRNFSGGG AVQSIDNHHT PVSGGDNNNN GDVDGGLAQD LHHGGGRFES DSGGGNVNAS  300
SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201832421675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33764.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171881e-82AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBankAP0020491e-82AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBankAY0931711e-82AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankAY1288201e-82AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBankCP0026861e-82CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395326.11e-121zinc-finger homeodomain protein 9
SwissprotQ9LHF01e-117ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A087GV620.0A0A087GV62_ARAAL; Uncharacterized protein
STRINGA0A087GV620.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-83homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]