PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33696.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 330aa    MW: 36014.7 Da    PI: 7.5644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33696.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19134184256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  KFK33696.1 134 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 184
                 59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.81E-17133193No hitNo description
SMARTSM003801.1E-36134197IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22134191IPR016177DNA-binding domain
PROSITE profilePS5103223.301134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-31134192IPR001471AP2/ERF domain
PfamPF008473.3E-13135184IPR001471AP2/ERF domain
PRINTSPR003674.3E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.3E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEETNDVFQT TNFSPKISEI RASLSQIILA GGPNTLDSIF SLLTPSSSST TTSHNPSPPP  60
SPSLSQPPPQ LGSSVYLRQR DLIERLHLQN RPISTPSLFS HQSSELMLQA AAVSPAAAYA  120
AALAAGRTAQ KKKLYRGVRQ RHWGKWVAEI RLPQNRMRVW LGTYDTAEAA AYAYDRAAYK  180
LRGEYARLNF PNLKDPSELL GLGDSSKLLA LKNAVDGKIQ TICQKVRRER AKKSGKSSKN  240
SSPEKIESPA VMATETTVVS SEESCYWNSQ MGFGDGGESS SPASVLVSDE VPAMVTTAEE  300
DMMMGVDTDG FLLARMPSFD PELLWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19131191263ATERF1
3gcc_A1e-19131191263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391624.11e-153ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-139ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A087GUZ40.0A0A087GUZ4_ARAAL; Uncharacterized protein
STRINGA0A087GUZ40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-110ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]