PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33520.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30134.9 Da    PI: 9.4244
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33520.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri+nk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
  KFK33520.1  9 KRIDNKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box867.6e-29821748100
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++++++ ++ +q++ kLk++++ Lq++qRhllGe+L ++ ++eL+qLe+q+++sl++iRs+K + +l q+++l+ ke++l e+n++Lr+klee
  KFK33520.1  82 NQSAKDLQEKYQDYLKLKSRVDILQHSQRHLLGEELADMGVNELEQLERQVDTSLRQIRSTKARSMLYQLSDLKTKEEMLLETNRDLRRKLEE 174
                 3678899***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.758161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002658.88E-43277No hitNo description
SuperFamilySSF554559.03E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014868.9E-2486172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.60388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRGKVELKR IDNKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS  60
PSGMVKTVEK YRKHSYATMD PNQSAKDLQE KYQDYLKLKS RVDILQHSQR HLLGEELADM  120
GVNELEQLER QVDTSLRQIR STKARSMLYQ LSDLKTKEEM LLETNRDLRR KLEESDAALT  180
QSLWGPSSAA EHSHQQQQQQ QQQQQEGMSS YQSNPPNQET GFFKPLQGNV VQMSHNYNPG  240
VTNASNSATT SQNVNGFFPG WMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-229317222101Developmental protein SEPALLATA 3
4ox0_B9e-229317222101Developmental protein SEPALLATA 3
4ox0_C9e-229317222101Developmental protein SEPALLATA 3
4ox0_D9e-229317222101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU813690.0U81369.1 Arabidopsis thaliana MADS box protein (AGL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481405.11e-165PREDICTED: agamous-like MADS-box protein AGL3
RefseqXP_018481406.11e-165PREDICTED: agamous-like MADS-box protein AGL3
RefseqXP_018481407.11e-165PREDICTED: agamous-like MADS-box protein AGL3
SwissprotP293831e-160AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A087GUG80.0A0A087GUG8_ARAAL; Uncharacterized protein
STRINGA0A087GUG80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.11e-161MIKC_MADS family protein
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]