PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33519.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 411aa    MW: 45345.9 Da    PI: 7.0869
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33519.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.32.4e-30214268156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++W+p+LH+rFv+a++ LGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  KFK33519.1 214 KARRCWSPDLHRRFVQALQMLGGSQ-ATPKQIRELMKVDGLTNDEVKSHLQKYRLH 268
                 68*******************9987.****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.381211270IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-29212271IPR009057Homeodomain-like
SuperFamilySSF466893.76E-18212271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-26214268IPR006447Myb domain, plants
PfamPF002492.7E-7216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLLKSFGDNF QSDQTTQKLE DLLSLLEQER LKIDAFKREL PLCMQLLNNA VEVYKQQLEA  60
YRANSNNNQS LATRPVLEEF IPLRNQPEKA NNKGSNWMTT AQLWSQPEIK PKNIDSATDH  120
SLPKDEIASS PKLGHFDAKQ RNGGGAFLPF SKEQSLPELA LSTEVKRVSL TNEHTNDHDG  180
NDENMINNGN NNNNNNNNSN SNGVSSTTSQ SNRKARRCWS PDLHRRFVQA LQMLGGSQAT  240
PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GPGPHLVVLG GIWVPPEYTT  300
GHGGTPTLYH HQVHHHHGTA AAQPPPHFCS SQEFYTTPPQ PLHHNNHFQT FNGSSGGGAA  360
STDSGHQLTD GATDEGKSPE SGGGERKGLA ALREEGENQS NINGSEITLK F
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33519.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875207.10.0myb family transcription factor EFM
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A087GUG70.0A0A087GUG7_ARAAL; Uncharacterized protein
STRINGA0A087GUG60.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]