PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK33226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 32642.3 Da PI: 4.9668 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.9 | 6.7e-17 | 36 | 85 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h+e E+rRR++iN++f++L e++P++ ++K +Ka+ L +++eYI+ Lq KFK33226.1 36 KSKHSETEQRRRSKINERFQNLMEIIPQN----DQKRDKASFLLEVIEYIQFLQ 85 578*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-21 | 32 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.77E-15 | 32 | 89 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-18 | 34 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.387 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-14 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MNSPDLNDEF DSDVYTNLPS QSPTGIMTRR NRTSCKSKHS ETEQRRRSKI NERFQNLMEI 60 IPQNDQKRDK ASFLLEVIEY IQFLQEKVQL YEGSQQMWYQ APTKLIPWRN NNGSVAEMID 120 QPVVVPPFGL LSDMQNSVDD HYVDLGASTK ILEHSPVSAV SSCIPTEPLP QFVQHEFWQP 180 RSSCGSMDCQ KNELSNSDEK TSAMSTVCSQ RVQHTLTEAL KSSGVNMSET MISVQLSLGK 240 RADREYSFTA FASEDNCNSI ADEEGDSPTE TRSICKDLDH SQKRIRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00534 | DAP | Transfer from AT5G38860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK33226.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630499 | 1e-103 | AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860. | |||
GenBank | BT033131 | 1e-103 | BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405688.1 | 1e-153 | transcription factor BIM3 isoform X2 | ||||
Swissprot | Q9FMB6 | 1e-146 | BIM3_ARATH; Transcription factor BIM3 | ||||
TrEMBL | A0A087GTM4 | 0.0 | A0A087GTM4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GTM4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16131 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38860.1 | 1e-148 | BES1-interacting Myc-like protein 3 |
Publications ? help Back to Top | |||
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