PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 92aa    MW: 10544 Da    PI: 8.5097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33185.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-0724592054
                HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  +Lr++lP+   + +s K+s + +L+++++YI++L
  KFK33185.1 24 VTKLRQILPEmGQRRRSDKVSASKVLQETCNYIRNL 59
                579*******988*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.832459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRQSP SAPRISDDQM IDLVTKLRQI LPEMGQRRRS DKVSASKVLQ ETCNYIRNLN  60
KEVDNLSDRL SQLLESVDED SPEAAVIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444202.17e-53PREDICTED: transcription factor PRE1 isoform X1
SwissprotQ9LJX18e-51PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GTI31e-57A0A087GTI3_ARAAL; Uncharacterized protein
STRINGA0A087GTI32e-58(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-53bHLH family protein