PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33101.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 491aa    MW: 55883.6 Da    PI: 4.4811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33101.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08428484148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+ WT+eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ l
       KFK33101.1 428 RLLWTPEEEEMLKVGVERFAAEanknmPWRKILEMGEnvfhETRTPADLKDKWRNML 484
                      677******************9**********99877*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd154895.45E-464105No hitNo description
PROSITE profilePS512949.186423488IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-10423485IPR009057Homeodomain-like
SuperFamilySSF466896.58E-10426485IPR009057Homeodomain-like
SMARTSM007172.8E-4427486IPR001005SANT/Myb domain
PfamPF002494.1E-6430484IPR001005SANT/Myb domain
CDDcd116606.65E-11431485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGSKSIRSLR NSLDPSPSLP ERFGSGISNT HDEIVPFTFG VPHKKKQRHC IGTSETSLDL  60
EDACIVCEVS DNCVSRCCGV DCPVSFHQEC LDGSEDLENS FCPYCWFKIV AVKSKALRDK  120
AIEAEKAVYK YLDKEIESKD EVMESDGEQE HSVESTDVEL QGEKATPLSE EKQVQVDKDS  180
DKSPLTDQPE GDKEKLEVGT GKSREDMIED EVSEASEDEE RVATENIEDY EDTEIAEDQM  240
KVNKGPEEKR DVSRVLSMQK SFSRKEDDQV KQNENQRRSR RRRLVLSDTD SEEVGTDKSG  300
ENMKEDEVNE ASEDEEMVAT AENIEDDEDD KTPEVQTKVA GKKREVSPVL SMQESFSGKE  360
HGQVQQNEKQ GSRRRLILNA TDSEFSSTKE RNGEEDVTKE TSSSTKVANK SKPVAREISF  420
FNKDQRRRLL WTPEEEEMLK VGVERFAAEA NKNMPWRKIL EMGENVFHET RTPADLKDKW  480
RNMLRLGKLE H
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937352e-60AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178772e-60AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195432e-60AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452274.11e-140PREDICTED: transcriptional regulator ATRX
TrEMBLA0A087GT990.0A0A087GT99_ARAAL; Uncharacterized protein
STRINGA0A087GT990.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-06MYB_related family protein