PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33038.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 572aa    MW: 66012.4 Da    PI: 5.6022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33038.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07363405146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  +++G++ W+t    mg  + + ++k+ w+ 
       KFK33038.1 363 KGVWTKEDLELVKEFQAKHGND-WRTLGDAMG--KHRIHVKDAWRR 405
                      799*******************.********9..566778887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0057289360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-6292378IPR009057Homeodomain-like
PROSITE profilePS500905.993358406IPR017877Myb-like domain
SuperFamilySSF466894.09E-6362419IPR009057Homeodomain-like
SMARTSM007170.055362409IPR001005SANT/Myb domain
PfamPF139211.5E-9366423No hitNo description
Gene3DG3DSA:1.10.10.609.0E-5379418IPR009057Homeodomain-like
PROSITE profilePS500907.457407475IPR017877Myb-like domain
SMARTSM007175411477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-6419494IPR009057Homeodomain-like
SuperFamilySSF466894.9E-6455530IPR009057Homeodomain-like
PROSITE profilePS500907.178477530IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAQESDIRVD SEGTVVAEHT SLKKKEKKKK KNRENKDSFS GEVSEKEGEK LGDDSVVKKK  60
RVDSEAEDCV KESKKKKNKE KRADFDSEAK DSVEKSKKEN EEVRVDSEVD DVGKTESGGD  120
VNNDDVERKL GKRKLDGTDL GDEENREKSN KEIKKKRKKM KPSVDPEVEE TNKDTTNDAV  180
KEKNQDVGSG VEEKDLNNSV KDGEKKKRKK KKKLSEDAEA GENNDDGAKD VKKKRKKKSK  240
SDEDVTTPSS SKSNKKVKFS DQVEVFPSED KDSEEEEEED DDDEVKLVRG KRFTKEEDAL  300
VKKAVLDYID NHALGDEGLE MVMNCKSYPQ IKGCWKEIES ALPWRARSSV YYRAHNLFEE  360
GSKGVWTKED LELVKEFQAK HGNDWRTLGD AMGKHRIHVK DAWRRIRLNM NKGHWSREEY  420
QALFDLVNTD IKMKAFKEKH SKHGMLRDNI PWMAISDKLG TRGHVHCCEK WYNQLTSPMV  480
KQGIWANVDD YRLLDELTNL DAACIDDVEW DNLLENRDGY ACRKRWNQMV LHIGSQESKT  540
FAEQVEILSQ RYCPDLAEDR EDFDNRPFDP ED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15876KKRVDSEAEDCVKESKKKK
2127134RKLGKRKL
3203213EKKKRKKKKKL
4204212KKKRKKKKK
5231237KKKRKKK
6232236KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430979.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A087GT360.0A0A087GT36_ARAAL; Uncharacterized protein
STRINGA0A087GT360.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein