PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32985.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 402aa    MW: 44607.6 Da    PI: 5.298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32985.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-112363972374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf +AL++r+ +     +++ l+ +  +  +s++ ++al++f+ v+P++kfsh+taN
  KFK32985.1  36 LSLLLQCAEYVATNHLNEASTLLSEISEICSPFGSSPERVVAYFSQALQTRVISsYLAATCSPLSDNLLTVFQSQKIFSALQTFNSVTPLIKFSHFTAN 134
                 689*************************************************99455666667777777767799999********************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI++a++ge+ vHiiD+d++qGlQWp L++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++l +pfef++ ++ ++ ++++++L +++
  KFK32985.1 135 QAIYQALDGEDSVHIIDLDVMQGLQWPGLFNILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFAASLSLPFEFHP-IEGKIGNINPSQLGIRH 228
                 **************************************************....9**************************.699************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 +Ea++V++++  hrl+d +++ ++    +L+++++l+P+++++veqe++ +++     +Fl rf+eal+yysalfd++  +l++es er +vE+ +l+ 
  KFK32985.1 229 DEAVVVHWMH--HRLYDVTGNDSE----TLEILRKLKPNLITMVEQELSDDDGggggsRFLGRFVEALHYYSALFDAIGDGLGEESGERFTVEQIVLAT 321
                 *********9..9**987777777....*******************76644445555***************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ei+n+v   g++      ++++Wre l+++GF++v+l+ + a+qa lll + +++gy++ e+sg+l lgWkd +L+++SaW+
  KFK32985.1 322 EIRNIVVGGGRR------KMMRWREELSRVGFRSVSLRGNPATQAGLLLGMLPWNGYTLVEDSGTLRLGWKDLSLLTASAWQ 397
                 **********98......8999***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.0679377IPR005202Transcription factor GRAS
PfamPF035146.3E-11036397IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MATKRIERDF PSSTVVKRRR DLEDEEEEDN GAIKLLSLLL QCAEYVATNH LNEASTLLSE  60
ISEICSPFGS SPERVVAYFS QALQTRVISS YLAATCSPLS DNLLTVFQSQ KIFSALQTFN  120
SVTPLIKFSH FTANQAIYQA LDGEDSVHII DLDVMQGLQW PGLFNILASR PRKLRSIRIT  180
GFGSSSDLLA STGRRLADFA ASLSLPFEFH PIEGKIGNIN PSQLGIRHDE AVVVHWMHHR  240
LYDVTGNDSE TLEILRKLKP NLITMVEQEL SDDDGGGGGS RFLGRFVEAL HYYSALFDAI  300
GDGLGEESGE RFTVEQIVLA TEIRNIVVGG GRRKMMRWRE ELSRVGFRSV SLRGNPATQA  360
GLLLGMLPWN GYTLVEDSGT LRLGWKDLSL LTASAWQSQP LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-141183963378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199007.10.0GRAS family transcription factor
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A087GSY30.0A0A087GSY3_ARAAL; Uncharacterized protein
STRINGA0A087GSY30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]