PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32795.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 323aa    MW: 35813.5 Da    PI: 6.6838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32795.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.9e-13135181455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++N+++  L  llP +     kK +Ka+iLe A++++k+Lq
  KFK32795.1 135 EHVLAERKRRQKLNERLIALSALLPGL-----KKTDKATILEDAIKHLKQLQ 181
                 5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16135191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-16135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12136185No hitNo description
SMARTSM003539.7E-15137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDSTFMDLM IDTDEYLIDD WESDFPVGGE TTDHQNTNPC SESGSGLITE RPTKQMKANN  60
NKVISTSSSP SSSSSSSGSL TSQVISFGSP DPQTNLVETS LNFSNVAKLD QKVGSKRRDC  120
SNDNGGRREP HLMKEHVLAE RKRRQKLNER LIALSALLPG LKKTDKATIL EDAIKHLKQL  180
QERVKKLDEE RVGTKEMDQS IILVKRSQVY MDDGSSSYSS TCSAASPLSS SLEEVSIFRQ  240
TMPMIEARVS DRDLLIRVHC ENNKGGLIKI LSALENLRLN VVNSFTLPFG NSTLVVTILS  300
KMDKKFSRPV EDVVKSIRLA LAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404740.11e-168transcription factor NAI1
SwissprotQ8S3F11e-162BH020_ARATH; Transcription factor NAI1
TrEMBLA0A087GSE30.0A0A087GSE3_ARAAL; Uncharacterized protein
STRINGA0A087GSE30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-158bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]