PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32653.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 308aa    MW: 33762.5 Da    PI: 10.3309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32653.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30231288359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +d++++++tYegeH+h+
  KFK32653.1 231 DEFSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDQTMLIVTYEGEHRHN 288
                 99***********************8766****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-17178227IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-32217289IPR003657WRKY domain
PROSITE profilePS5081129.413224290IPR003657WRKY domain
SuperFamilySSF1182906.67E-26227289IPR003657WRKY domain
SMARTSM007743.2E-36229289IPR003657WRKY domain
PfamPF031062.8E-26231287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTVDIMRLPK IEDQTAIQEA ASQGIKSMEH LIHLLSNRPE HNNVDCSEIT DFTVSKFKKV  60
ISLLNRTGHA RFRRGPALSS PPAQISAPVI TPAPVSFVSP HQQSVTLDFT RPSVFGAKTK  120
SLEVVEFAKE SFSVSSNSSF MSSAITGDGS VSKGSSIFLA PAPVASSAKP PLAGLPYRKR  180
CFEHDQSQDF SGKISGSGNS KCHCKKSRKN RMKRTVRVPA ISAKIADIPP DEFSWRKYGQ  240
KPIKGSPHPR GYYKCSTFRG CPARKHVERA LDDQTMLIVT YEGEHRHNQS AMQENTSPTM  300
TGLVFGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20217288272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885201.10.0probable WRKY transcription factor 17
SwissprotQ9SJA80.0WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A087GS010.0A0A087GS01_ARAAL; Uncharacterized protein
STRINGA0A087GS010.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-174WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]