PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32625.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 79aa    MW: 8619.81 Da    PI: 4.0831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32625.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-172791898
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                lp +f++++g++k +  ++tl  e+g +W+ +l    k+g++ l++GW eF++ang+  g++++++ ++  +e+++v+k+++
  KFK32625.1  2 LPSQFMAANGINKLG--KITLLGENGMEWSAYL--LSKDGMVALGNGWDEFCEANGVTLGESFTLEWINLqDETTPVLKICS 79
                8*********99766..8***************..*******************************997779999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.169179IPR003340B3 DNA binding domain
PfamPF023623.6E-16279IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-15278IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-9279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-14279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
HLPSQFMAAN GINKLGKITL LGENGMEWSA YLLSKDGMVA LGNGWDEFCE ANGVTLGESF  60
TLEWINLQDE TTPVLKICS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604125.13e-36PREDICTED: B3 domain-containing protein REM13-like isoform X1
RefseqXP_013604126.13e-36PREDICTED: B3 domain-containing protein REM13-like isoform X2
RefseqXP_013660737.13e-36B3 domain-containing protein REM13-like
SwissprotP0CAP53e-32REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A087GRX37e-51A0A087GRX3_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087GRX31e-51(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-34DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]