PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32620.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 791aa    MW: 89249.5 Da    PI: 5.3839
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32620.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.3e-131893990
                HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                + + ++ lv+p +f++++ + +k  + t+ l++ +s  +W+vk+  ++++    l++GW++F+ +n+L+ gD+++ +++g+  f
  KFK32620.1 18 SGFHTH-LVIPVDFFSKYiQ-EKSVEDTVELKSdSSDMTWKVKM--TGQR----LSDGWEDFAVSNNLQIGDVLLVRYEGDLVF 93
                444555.***********73.3344458999885777*******..8887....***********************9875333 PP
2B359.27.2e-19150242397
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +++++++l+++ l+lp +f++++g+ +++  +++l d   rsW + l+++++s+++++++GW++F+ +ng +eg +++Fk +g s+++lv++ +
  KFK32620.1 150 VATVTASSLRTDTLYLPQHFTSANGLTTKC-CKIVLIDGGERSWALDLSFNNSSDTFYISRGWRNFCYENGQEEGGVFMFKIVG-SGETLVLSSC 242
                 5677999999**************999766.5*************************************************988.6666776655 PP
3B341.32.8e-13320409499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p+d+ + +rl lp +f++e++++k++  ++ l  ++g +    l   + +g++ l+kGWk+Fvkang+k+  ++++kl++ ++++++++++++
  KFK32620.1 320 FTLPPDYIRIRRLNLPVPFLRENNINKPG--KIYLLGKNGTKCLTSL-LLNMRGAMSLGKGWKGFVKANGIKT--SFTLKLIW-EDTTPMFSLCDA 409
                 5679999****************999766..7**********99999.466667899**************97..68899999.8999*****997 PP
4B357.81.9e-18472564197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f++ ++++++++++rl+lp  fa+e++++k++  ++ l  ++g +W+ +l  r k+g++ l+kGW +F +a++Lk+g++++ +l++ ++++++++++
  KFK32620.1 472 FVTFTITPSSFTKCRLILPAGFARENSMDKPG--MICLVGKDGTKWQTTL-LRDKKGTMGLGKGWIDFGEAHDLKAGESFTMELTW-EDETPLLSWC 564
                 778899********************999666..8***************.566667789************************99.6666777776 PP
5B347.82.6e-15601675684
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 + +   k ++l lp +f++++g++k +  ++tl  e+g +W+ +l    k+g++ l+kGW eF++ang+k+g+ +++++
  KFK32620.1 601 LAPEDVKACQLHLPSQFMKANGISKLG--KITLLGENGMEWSGYL--LTKDGTVALGKGWDEFCEANGVKSGEPFTLEF 675
                 4556667899***********999755..8***************..9999************************9985 PP
6B3322.2e-106787244496
                 -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + Wevk+  +  +++  lt+GWkeF+ a++L++gD+ vF+ ++++ f  +v++
  KFK32620.1 678 KPWEVKV--EEDGQK--LTDGWKEFALAHDLRVGDIAVFRQERDMVF--HVTL 724
                 78*****..777766..***********************7777777..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-178102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-159104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.1969101IPR003340B3 DNA binding domain
CDDcd100177.61E-111096No hitNo description
SMARTSM010191.6E-1712101IPR003340B3 DNA binding domain
PfamPF023621.0E-81990IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-20140244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21143246IPR015300DNA-binding pseudobarrel domain
CDDcd100175.77E-16148240No hitNo description
PROSITE profilePS5086313.902148244IPR003340B3 DNA binding domain
PfamPF023621.2E-16149242IPR003340B3 DNA binding domain
SMARTSM010192.3E-22149245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-11316406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-12317400IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.037317410IPR003340B3 DNA binding domain
SMARTSM010194.4E-19317410IPR003340B3 DNA binding domain
PfamPF023624.5E-12319409IPR003340B3 DNA binding domain
CDDcd100172.48E-11322408No hitNo description
Gene3DG3DSA:2.40.330.102.1E-23461574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20468566IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-17472565IPR003340B3 DNA binding domain
SMARTSM010194.7E-25472567IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169472568IPR003340B3 DNA binding domain
CDDcd100171.35E-15476559No hitNo description
Gene3DG3DSA:2.40.330.102.6E-17589676IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-17592678IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.774596690IPR003340B3 DNA binding domain
PfamPF023625.3E-14596675IPR003340B3 DNA binding domain
SMARTSM010191.7E-14596685IPR003340B3 DNA binding domain
CDDcd100174.13E-11609685No hitNo description
Gene3DG3DSA:2.40.330.107.1E-19677741IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-12678735IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.361691728IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MVKSTLLRHP QFFHTLVSGF HTHLVIPVDF FSKYIQEKSV EDTVELKSDS SDMTWKVKMT  60
GQRLSDGWED FAVSNNLQIG DVLLVRYEGD LVFHVSDLGP NCSETRDIAP PSSNNDDDDN  120
MEFHRKKKLR KNCSEGEAGS SSSSDNSCFV ATVTASSLRT DTLYLPQHFT SANGLTTKCC  180
KIVLIDGGER SWALDLSFNN SSDTFYISRG WRNFCYENGQ EEGGVFMFKI VGSGETLVLS  240
SCPTESSNDR KQRDCSEASG RESISTKVNC EEENIEMENS EDECSSMESL LVVEKMEYSR  300
KRTVSSYSSY SPCHKRLVTF TLPPDYIRIR RLNLPVPFLR ENNINKPGKI YLLGKNGTKC  360
LTSLLLNMRG AMSLGKGWKG FVKANGIKTS FTLKLIWEDT TPMFSLCDAE STIDREQEDL  420
SKTSETESSF IDSSNRDKIN KYEINKEESR SWERNKNDLR RRDSTPSSQK QFVTFTITPS  480
SFTKCRLILP AGFARENSMD KPGMICLVGK DGTKWQTTLL RDKKGTMGLG KGWIDFGEAH  540
DLKAGESFTM ELTWEDETPL LSWCCRESSS SKANEKESVS TEPRGIDSSS AIQNQFVTLA  600
LAPEDVKACQ LHLPSQFMKA NGISKLGKIT LLGENGMEWS GYLLTKDGTV ALGKGWDEFC  660
EANGVKSGEP FTLEFLNKPW EVKVEEDGQK LTDGWKEFAL AHDLRVGDIA VFRQERDMVF  720
HVTLLGPSCC EIQYESCLNN EKNLERYFLF FLREDSEKEV KKNPKRETKS SCFVANVSPA  780
TLSYYSLVLQ Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604126.10.0PREDICTED: B3 domain-containing protein REM13-like isoform X2
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A087GRW80.0A0A087GRW8_ARAAL; Uncharacterized protein
STRINGA0A087GRW80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]