PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32561.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YB
Protein Properties Length: 180aa    MW: 19996.9 Da    PI: 4.6103
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32561.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.92.4e-1310102794
       NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 +lP+a v r++k  l +     +  i k+a     e +  fi +++s a+d c+  +r+t+++dd++ a+ ++ f +++epl++ l ++++ +
  KFK32561.1  10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSSTANDFCKDARRQTMKADDVFKAIEEMDFSEFLEPLQASLLEFKKKN 102
                 79**********999652222356899*********************************************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-2810109IPR009072Histone-fold
PfamPF008084.4E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.28E-2111118IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.9E-28141152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MESEKVAVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSSTAND  60
FCKDARRQTM KADDVFKAIE EMDFSEFLEP LQASLLEFKK KNAGKKASAT NPGGGAALET  120
KKRKHEGSSS MQKGDSKDDQ NHKENDKEGE GNSTEENGNE SKSQDNSMED NASRQEGEDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-102BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003731.11e-73DNA polymerase epsilon subunit 3
TrEMBLA0A087GRQ91e-128A0A087GRQ9_ARAAL; Uncharacterized protein
STRINGA0A087GRQ91e-129(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-62nuclear factor Y, subunit B11