PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK32424.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

FAR1

Protein Properties

Length: 789aa MW: 89874.5 Da PI: 7.0201

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32424.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.5	1e-08	27	97	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fY+eY++++ F+ + s+ +g+ t r+fvC + ++++ ++ C+a+l+++++ d+ w+vtk++++H+H l KFK32424.1 27 FYEEYSRQLAFTSKPL----SRPDGSLTAREFVCCSKRSNRRPAET--------------CDAMLRIELKApDKCWVVTKFVKDHTHVL 97 9999999999987655....46689999***9988887776666..............*******9*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-4	56	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-23	193	284	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	471	507	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-10	476	505	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	482	509	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MGDCSNMEIA EPCVGMEFPS EKDAKCFYEE YSRQLAFTSK PLSRPDGSLT AREFVCCSKR 60 SNRRPAETCD AMLRIELKAP DKCWVVTKFV KDHTHVLGTP TLHCLRPRRH FAKAVNVPSG 120 MMYVAPLDSS NRGALKRTMG RDAHNLLEYF QRMQAQNPGF FYAIQLDEDN QMTNVFWADS 180 RSRIAYTHFG DTVTLDTRYS CNQFRLPFAP FTGVNHHGHT ILFGCALLLD ESDTSFIWLF 240 KTFLTAMRDH PPVSLVTDQD RAIQIAVAQV FPAARHCINK WDVLREGQEK LAHVCLAYPS 300 FQVELHTCIN FTETIDEFES SWTSIIEKYD LGRHEWLTSL YNARAQWVPV FFRDSFFATV 360 FPGQGYPGSF FDGYVTQQTT LPMFFRLYER AMESWFEMEI EADLDTVNTP PVLKTPSPME 420 NQAANLFTRK IFAKFQEELV ETFAYIANRI DDNGTTSTFR VAKFENNNKA YMVTFCYPEM 480 KANCSCQMFE HSGILCRHVL TVFTVTNILT LPPHYILRRW TRNAKSMVGL DEHVSEDGHD 540 SLIHRYNHLC REAIKYAEEG AITSESYNIA LGALREGGKK VSVVRKNAPP SSHGGDDKTS 600 LLASETTPLL WPRQDEMVRR FNLNDGGARA KSVADLNLPR MAPVSLHRDD GAPENMVALP 660 CLKSMTWVME SKNTMPGGRV AVINLKLHDY RKFPSEDMEV KFQLSSVTLE PMLRSMAYIS 720 EQLSAPANKV AVINLKLQDT ETITGESEVK FQVSRDTLGA MLRSMAYIRE QLSTVGELQT 780 EPQTKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MGDCSNMEIA EPCVGMEFPS EKDAKCFYEE YSRQLAFTSK PLSRPDGSLT AREFVCCSKR  60
SNRRPAETCD AMLRIELKAP DKCWVVTKFV KDHTHVLGTP TLHCLRPRRH FAKAVNVPSG  120
MMYVAPLDSS NRGALKRTMG RDAHNLLEYF QRMQAQNPGF FYAIQLDEDN QMTNVFWADS  180
RSRIAYTHFG DTVTLDTRYS CNQFRLPFAP FTGVNHHGHT ILFGCALLLD ESDTSFIWLF  240
KTFLTAMRDH PPVSLVTDQD RAIQIAVAQV FPAARHCINK WDVLREGQEK LAHVCLAYPS  300
FQVELHTCIN FTETIDEFES SWTSIIEKYD LGRHEWLTSL YNARAQWVPV FFRDSFFATV  360
FPGQGYPGSF FDGYVTQQTT LPMFFRLYER AMESWFEMEI EADLDTVNTP PVLKTPSPME  420
NQAANLFTRK IFAKFQEELV ETFAYIANRI DDNGTTSTFR VAKFENNNKA YMVTFCYPEM  480
KANCSCQMFE HSGILCRHVL TVFTVTNILT LPPHYILRRW TRNAKSMVGL DEHVSEDGHD  540
SLIHRYNHLC REAIKYAEEG AITSESYNIA LGALREGGKK VSVVRKNAPP SSHGGDDKTS  600
LLASETTPLL WPRQDEMVRR FNLNDGGARA KSVADLNLPR MAPVSLHRDD GAPENMVALP  660
CLKSMTWVME SKNTMPGGRV AVINLKLHDY RKFPSEDMEV KFQLSSVTLE PMLRSMAYIS  720
EQLSAPANKV AVINLKLQDT ETITGESEVK FQVSRDTLGA MLRSMAYIRE QLSTVGELQT  780
EPQTKKQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32424.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317350	0.0	AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293662.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A087GRC2	0.0	A0A087GRC2_ARAAL; Uncharacterized protein
STRING	A0A087GRC2	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]