PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32220.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 307aa    MW: 34870.4 Da    PI: 4.2493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32220.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-061872251255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  KFK32220.1 187 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 225
                 677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.004175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-11185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-8185228No hitNo description
SMARTSM003536.6E-4186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9189230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTEEFEIAGI STGTWWTSPT NSFSGYSLPR STEISLDVTN FGWQNFDNKI NDQNDDYNMN  60
LNTSQISSWN QSIMHNSFFE GLFDPNEQLQ SDSWPRTTIP NTKSERLESL PFFDNMFLID  120
SEADSFLDQE IRNHNSKEQI TQACNNPTSK RSEKTEELEE NSDEYSPRLL KRQRIDTLSP  180
LPSFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLNEAVEY IKFLQEQVTV LCNPDQNTIG  240
SVQQQQCLGK NSTQQEDECS SRRQVDLASR GLCLMPISTT YPVAAAAASA AEMNTSDFWN  300
FPFSVNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874835.21e-156LOW QUALITY PROTEIN: transcription factor bHLH114
SwissprotQ9M0X81e-143BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A087GQR80.0A0A087GQR8_ARAAL; Uncharacterized protein
STRINGA0A087GQR80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-111bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]