PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK32175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | TALE | ||||||||
Protein Properties | Length: 384aa MW: 44249.1 Da PI: 6.5116 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 309 | 344 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ KFK32175.1 309 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 344 5679*****************************885 PP | |||||||
2 | ELK | 35.9 | 1.6e-12 | 264 | 285 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s KFK32175.1 264 ELKNHLLKKYSGYLSSLKQELS 285 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-22 | 120 | 164 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.0E-22 | 121 | 162 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.4E-31 | 169 | 220 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.5E-26 | 174 | 219 | IPR005541 | KNOX2 |
Pfam | PF03789 | 7.6E-10 | 264 | 285 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-6 | 264 | 285 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 264 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.021 | 284 | 347 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-19 | 285 | 359 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 286 | 351 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 289 | 350 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.05E-11 | 296 | 348 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 304 | 343 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 322 | 345 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEEYQHDSSS TPNRVSFLYS PISSSGKNDN ASDNNNSNYA PGYNNNNNNP QHHQHMLFPQ 60 MSPLIPQTTD NCFRSDHDQP NNPSVKSEAS SSRINHYSML MRAIHSTQEA NNNSNVNDVE 120 AMKAKIIAHP HYSTLLQAYL DCQKIGAPPE VADRITAARQ DFESREQRST SVTSRDPELD 180 QFMEAYCDML VKYREELTRP IQEAMEFIRR IESQLSMLCQ GPIHILNNPD GKSERMGSSD 240 EEQENNSGGE TELPEIDPRA EDRELKNHLL KKYSGYLSSL KQELSKKKKK GKLPKEARQK 300 LLTWWELHYK WPYPSESEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLQ 360 HPHHHAALYM DGHYMGDGPY RLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK32175.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU14174 | 0.0 | U14174.1 Arabidopsis thaliana clone KNAT1 knotted-like homeobox protein gene, partial cds. | |||
GenBank | AY080834 | 0.0 | AY080834.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. | |||
GenBank | AY113982 | 0.0 | AY113982.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421735.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X2 | ||||
Swissprot | P46639 | 0.0 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A087GQM3 | 0.0 | A0A087GQM3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GQM3 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 0.0 | KNOTTED-like from Arabidopsis thaliana |