PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK32160.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Nin-like

Protein Properties

Length: 832aa MW: 93022.6 Da PI: 6.1524

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32160.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	552	602	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ KFK32160.1 552 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 602 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.496	536	622	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	554	602	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.69E-20	721	817	No hit	No description
SMART	SM00666	9.9E-22	728	814	IPR000270	PB1 domain
PROSITE profile	PS51745	19.289	728	814	IPR000270	PB1 domain
CDD	cd06407	2.62E-32	729	813	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-23	730	814	No hit	No description
Pfam	PF00564	1.0E-17	730	813	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MELDDLDLGG SWPLDQITFG SNFRFSSSSE QPFSPLWSFS EAVSVTGDVD AELSSSVPTR 60 LTDYSVLLTS SESETTKENI PSPLWGIMPI PMENYPDSYC AIKAKMTQAL RYFKESTGKQ 120 HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN SNGLNQYRMV SLTYMFNVDS ERDGELGLPG 180 RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPTRQLCV GVVELIMTSP 240 KINYAPEVEK VCKALEAVNL KTSEILNPET TQICNEGRQN ALAEILEILT VVCETYKLPL 300 AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC MGKVCMSTSD LAVYVVDAHV WGFRDACAEH 360 HLQKGQGVAG RAFMSGNLCF CRDVTQFCKT DYPLVHYARM FKLASCFAVC LKSSYTGDDE 420 YVLEFFLPPA ITDKSEQDCL LSSLFQTMKQ HYSSLKVVSE TEFCENEMSI EVVEASEDGM 480 VYSKLEPIQI HRPAPISKDY LQLNVPEQKL SLNTDLMENN EVADGFEMFQ TLDPSPEAKT 540 GKKSERKRGK TEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN 600 KVNRSLTRLK HVIDSVQGAD GSINLSPWPH QVSTIENQKP PAIRSPTSYL QDIKLENRDP 660 EDSAGSSTSR ASSKVTPISE TRFRLLTQNQ EAFKQTGFDD SDSTSKKIAS FWTSQQDTAF 720 PTTLHNKLMS IKATYKEDII RFKISPESVN ITELKQQVAK RLKLETTAFE LKYLDDDKEW 780 VSVSCDADLS ECLDTSSVAT AAKAKTMRLS VHDVTPNFGS SCESSEETMM CL

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MELDDLDLGG SWPLDQITFG SNFRFSSSSE QPFSPLWSFS EAVSVTGDVD AELSSSVPTR  60
LTDYSVLLTS SESETTKENI PSPLWGIMPI PMENYPDSYC AIKAKMTQAL RYFKESTGKQ  120
HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN SNGLNQYRMV SLTYMFNVDS ERDGELGLPG  180
RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPTRQLCV GVVELIMTSP  240
KINYAPEVEK VCKALEAVNL KTSEILNPET TQICNEGRQN ALAEILEILT VVCETYKLPL  300
AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC MGKVCMSTSD LAVYVVDAHV WGFRDACAEH  360
HLQKGQGVAG RAFMSGNLCF CRDVTQFCKT DYPLVHYARM FKLASCFAVC LKSSYTGDDE  420
YVLEFFLPPA ITDKSEQDCL LSSLFQTMKQ HYSSLKVVSE TEFCENEMSI EVVEASEDGM  480
VYSKLEPIQI HRPAPISKDY LQLNVPEQKL SLNTDLMENN EVADGFEMFQ TLDPSPEAKT  540
GKKSERKRGK TEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN  600
KVNRSLTRLK HVIDSVQGAD GSINLSPWPH QVSTIENQKP PAIRSPTSYL QDIKLENRDP  660
EDSAGSSTSR ASSKVTPISE TRFRLLTQNQ EAFKQTGFDD SDSTSKKIAS FWTSQQDTAF  720
PTTLHNKLMS IKATYKEDII RFKISPESVN ITELKQQVAK RLKLETTAFE LKYLDDDKEW  780
VSVSCDADLS ECLDTSSVAT AAKAKTMRLS VHDVTPNFGS SCESSEETMM CL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A087GQK8	0.0	A0A087GQK8_ARAAL; Uncharacterized protein
STRING	A0A087GQK8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]