PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 255aa    MW: 28027.3 Da    PI: 4.8289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32082.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13189234655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  KFK32082.1 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 234
                 689*********************7....688***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-16186249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-12187238No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQSTSVGSSG GGSSGGGGGQ LSRSGLSRIR SAPATWLETL LEEDEEDSLK PNLGLTELLT  60
GNSSDIPTSR GSFEFPIPVE QGLYQQGGFH RQNSTPADFL SGADGFIPNY GIPANYEYMD  120
VSPGSKRSRE MEALFSSPDF TSQMKGEQSS GQVPAGASGM MDMNMDNLME DSVAFRVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KVLQRQIQEL  240
KEEQKRCTCM PKEEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303840.0AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBankBT0104230.0BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288460.11e-145transcription factor bHLH81
SwissprotQ9M0R01e-144BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A087GQD00.0A0A087GQD0_ARAAL; Uncharacterized protein
STRINGA0A087GQD00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-124bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]