PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK32082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28027.3 Da PI: 4.8289 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.8e-13 | 189 | 234 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq KFK32082.1 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 234 689*********************7....688***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.557 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-16 | 186 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-12 | 187 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 188 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-12 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-10 | 189 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MQSTSVGSSG GGSSGGGGGQ LSRSGLSRIR SAPATWLETL LEEDEEDSLK PNLGLTELLT 60 GNSSDIPTSR GSFEFPIPVE QGLYQQGGFH RQNSTPADFL SGADGFIPNY GIPANYEYMD 120 VSPGSKRSRE MEALFSSPDF TSQMKGEQSS GQVPAGASGM MDMNMDNLME DSVAFRVRAK 180 RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KVLQRQIQEL 240 KEEQKRCTCM PKEEQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK32082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230384 | 0.0 | AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13. | |||
GenBank | BT010423 | 0.0 | BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288460.1 | 1e-145 | transcription factor bHLH81 | ||||
Swissprot | Q9M0R0 | 1e-144 | BH081_ARATH; Transcription factor bHLH81 | ||||
TrEMBL | A0A087GQD0 | 0.0 | A0A087GQD0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GQD0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09180.1 | 1e-124 | bHLH family protein |
Publications ? help Back to Top | |||
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