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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KFK31661.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family |
C2H2 |
Protein Properties |
Length: 459aa MW: 50278.4 Da PI: 8.1126 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KFK31661.1 | genome | MPIPBR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 67 | 87 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
KFK31661.1 67 CEICGKGFQRDQNLQLHRRGH 87
*******************88 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MTEEVLQTIS SGPGFAQSSS TLDHDDSLII NPPLAKKKRN LPGNPDPEAE VIALSPKTLM 60 ATNRFLCEIC GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE VIKRVYVCPE KTCVHHHSSR 120 ALGDLTGIKK HFCRKHGEKK WKCEKCAKKY AVLSDWKAHS KTCGTREYRC DCGTIFSRRD 180 SFITHRAFCD ALAEETAKIN GLAAAGAAGI NLNYQYLMGT HMQPLQPFEQ PPPSTNQNVL 240 HHFPPPPHAT SSLSLWMGKN INDNSVSSQP QPQDYDWVFG NAKVASACIN NNTNHDEFIT 300 QTANATSTTS TTLSVPCLFS SDQTLTADAN ANMSATALLQ KAAVIGASST ATTPSTFLHS 360 FPLKSSDQSA TYDGGEKFFA LFGSNSNNNV EIMSQTHEHG IENATNDVTV ASAMDELQNY 420 PWKRRRVDGG EGGGGGQTRD FLGVGVQTIC HPSSINGWI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |