PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK31578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | BES1 | ||||||||
Protein Properties | Length: 678aa MW: 76230.4 Da PI: 6.0531 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 162.5 | 2.7e-50 | 75 | 223 | 1 | 144 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ssl 98 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+ +++++ ++s+es+l+ ssl KFK31578.1 75 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQFPTRSIESPLSsSSL 169 6899***********************************************************************9....999**********99999* PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa........asllpvlsvls 144 k++++a+ +++++++ ++ +sp+slds+ +a++ + +p++s + KFK31578.1 170 KNCTKAALECQQNSVLRIDENLSPVSLDSVVIAESdhpgngryTGATPITSIGC 223 ********************************9886676666555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.2E-48 | 76 | 222 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.62E-158 | 243 | 676 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 2.9E-167 | 246 | 675 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 6.8E-81 | 252 | 638 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 282 | 296 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 303 | 321 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 325 | 346 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 418 | 440 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 491 | 510 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 525 | 541 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 542 | 553 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 560 | 583 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 9.6E-53 | 597 | 619 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MHTLNTTTTT TTTGGSQDPI DPNLDPDPFP HRIHNQPQSR RPRGFAAAAA ASTESENGNI 60 GSGEASSDGG RGGGGGKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD 120 MNDVIAALAR EAGWSVDADG TTYRQSHQPN HVVQFPTRSI ESPLSSSSLK NCTKAALECQ 180 QNSVLRIDEN LSPVSLDSVV IAESDHPGNG RYTGATPITS IGCLEANQLI QDVHSTEPRN 240 DFTESFYVPV YTMLPVGIID NFGQLVNPEG VKQELSYMKS LNVDGVVIDC WWGIVEGWNP 300 QKYVWSGYRE LFNLIRGFKL KLQVVMAFHE YGGNAPGNVM ISLPQWVLEI GKDNPDIFFT 360 DREGRRSFEC LNWSIDKERV LHGRTGIEVY FDFMRSFRSE FDDLFVEGQI AAIEIGLGAS 420 GELKYPSFPE RMGWIYPGIG EFQCYDKYSQ TNLLKEAKSR GFAFWGKGPE NAGQYNSQPH 480 ETGFFQERGE YDSYYGRFFL NWYSQLLIGH AENVLSLANL AFEETKIIVK IPAIYWSYKT 540 ASHAAELTAG YYNPSNRDGY SLIFETLKKY SVTVKFVCPG PHMSPNQHEE AADPEGLSWQ 600 VINAAWDKEL IIGGENAITC FDREGCMRLI EMAKPRNHPD SYHFSFFSYR QPSPLVQGST 660 CFADLDYFIK RMHGDIQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wqs_A | 1e-118 | 247 | 676 | 12 | 447 | Beta-amylase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 75 | GGRGGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK31578.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117140 | 0.0 | AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16. | |||
GenBank | BT006482 | 0.0 | BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865252.1 | 0.0 | beta-amylase 8 isoform X1 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A087GNX6 | 0.0 | A0A087GNX6_ARAAL; Beta-amylase | ||||
STRING | A0A087GNX6 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10888 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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