PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31577.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family BES1
Protein Properties Length: 676aa    MW: 76003.1 Da    PI: 6.0531
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31577.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.59.5e-49752211144
      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ssl 98 
                 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+        + ++s+es+l+ ssl
  KFK31577.1  75 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN------HVFPTRSIESPLSsSSL 167
                 6899************************************************************************......67777788888777889 PP

      DUF822  99 kssalaspvesysaspksssfpspssldsislasa........asllpvlsvls 144
                 k++++a+   +++++++ ++ +sp+slds+ +a++        +  +p++s  +
  KFK31577.1 168 KNCTKAALECQQNSVLRIDENLSPVSLDSVVIAESdhpgngryTGATPITSIGC 221
                 ********************************9886676666555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-4676220IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.16E-158241674IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.9E-167244673IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.5E-81250637IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53280294IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53301319IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53323344IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53416438IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53489508IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53523539IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53540551IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53558581IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-53595617IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MHTLNTTTTT TTTGGSQDPI DPNLDPDPFP HRIHNQPQSR RPRGFAAAAA ASTESENGNI  60
GSGEASSDGG RGGGGGKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD  120
MNDVIAALAR EAGWSVDADG TTYRQSHQPN HVFPTRSIES PLSSSSLKNC TKAALECQQN  180
SVLRIDENLS PVSLDSVVIA ESDHPGNGRY TGATPITSIG CLEANQLIQD VHSTEPRNDF  240
TESFYVPVYT MLPVGIIDNF GQLVNPEGVK QELSYMKSLN VDGVVIDCWW GIVEGWNPQK  300
YVWSGYRELF NLIRGFKLKL QVVMAFHEYG GNAPGNVMIS LPQWVLEIGK DNPDIFFTDR  360
EGRRSFECLN WSIDKERVLH GRTGIEVYFD FMRSFRSEFD DLFVEGQIAA IEIGLGASGE  420
LKYPSFPERM GWIYPGIGEF QCYDKYSQTN LLKEAKSRGF AFWGKGPENA GQYNSQPHET  480
GFFQERGEYD SYYGRFFLNW YSQLLIGHAE NVLSLANLAF EETKIIVKIP AIYWSYKTAS  540
HAAELTAGYY NPSNRDGYSL IFETLKKYSV TVKFVCPGPH MSPNQHEEAA DPEGLSWQVI  600
NAAWDKELII GGENAITCFD REGCMRLIEM AKPRNHPDSY HFSFFSYRQP SPLVQGSTCF  660
ADLDYFIKRM HGDIQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqs_A1e-11824567412447Beta-amylase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16875GGRGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871132.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A087GNX50.0A0A087GNX5_ARAAL; Beta-amylase
STRINGA0A087GNX60.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]