PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31444.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 332aa    MW: 37010.7 Da    PI: 6.9275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31444.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.1e-1688139155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++    ++K + a+i+  A+++Ik+L+
  KFK31444.1  88 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 139
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1686152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-1486142No hitNo description
PROSITE profilePS5088816.03187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-1388139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1388151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSESL SPTPFKSLVD LEPSPENDVI ISKNTTPTIS HHQEPPQPQR  60
PPPVANRGKK RRRRKPRVCK NEEEAENQRM THIAVERNRR RQMNQHLSVL RSLMPQPFAQ  120
KGDQASIVGG AIDFIKELEH QLLSLEAQKL QNAKLNHTVT SSTSQDSNGE PENPHQPSNS  180
PSLSLSQFFL HSHDPSQENR NGSISSVKTA MEDLEVTLIE THANIRILSR RRGFRWTTVA  240
TTGPPQLSKL VAALQSLSLT VLHLSVTTLD NFAIYSISTK VEENCQLSSV DDIAGAVHHM  300
LSIIEEEPFC CSSMSELPFD FSLNHTNTTH SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KKRRRRK
26875KKRRRRKP
36974KRRRRK
47076RRRRKPR
58899RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535550.0AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398364.10.0transcription factor bHLH71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A087GNJ20.0A0A087GNJ2_ARAAL; Uncharacterized protein
STRINGA0A087GNJ20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-156beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]