PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK31426.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 506aa MW: 56576.6 Da PI: 6.3404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK31426.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	341	386	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR+++N++f Lr ++P+ +K++K + L A+ YI++L KFK31426.1 341 SHVQAERLRREKLNQRFYALRAVVPNV-----TKMDKTSLLGDAICYINEL 386 6999********************8.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.8E-53	25	210	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.58	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	338	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-10	340	387	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-15	341	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-8	341	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-12	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005509	Molecular Function	calcium ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MIEALLSSSD VCPLAPASRS LETTLQKRLH AVLNCTHEAW TYAVFWKPSY YDFSGDSVLK 60 WGDGIYKGED GDTPRRRRKT TAEKEHRNKV LKELTSMISG EAFQVMNEGD DDDDDDVEVS 120 DTEWFYLVSM TWSFGRGSGL AGKAFATYNP VWVTGSDQIY GSGCNRAKQG GDLGLQTIVC 180 IPSDNGVLEL GSMEQIQQNS DLFNKIRFLF NFEGSKDFTG APNLMSVQLE KGNFSTVPNS 240 PNPDPSPVYM QMQNGFTQDL NFSTATSTSA RDLSGEILSF GDNVKHSLNP DRNSYSGQIQ 300 KEEGKMSTSG EKMDDSILVP ENKREKRRGR KPAKDREVPL SHVQAERLRR EKLNQRFYAL 360 RAVVPNVTKM DKTSLLGDAI CYINELKLKS ENAETEKNAV QIQLNKLKEQ ITGRRRNAIS 420 SGGEKNAFSE IDVKIIGCDA MIRVESNKSN HPGARFMNAL MDLEVEVNHA SISVINHLMI 480 QQATVKMGLR NYTEEQLRAM LSSKVN

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MIEALLSSSD VCPLAPASRS LETTLQKRLH AVLNCTHEAW TYAVFWKPSY YDFSGDSVLK  60
WGDGIYKGED GDTPRRRRKT TAEKEHRNKV LKELTSMISG EAFQVMNEGD DDDDDDVEVS  120
DTEWFYLVSM TWSFGRGSGL AGKAFATYNP VWVTGSDQIY GSGCNRAKQG GDLGLQTIVC  180
IPSDNGVLEL GSMEQIQQNS DLFNKIRFLF NFEGSKDFTG APNLMSVQLE KGNFSTVPNS  240
PNPDPSPVYM QMQNGFTQDL NFSTATSTSA RDLSGEILSF GDNVKHSLNP DRNSYSGQIQ  300
KEEGKMSTSG EKMDDSILVP ENKREKRRGR KPAKDREVPL SHVQAERLRR EKLNQRFYAL  360
RAVVPNVTKM DKTSLLGDAI CYINELKLKS ENAETEKNAV QIQLNKLKEQ ITGRRRNAIS  420
SGGEKNAFSE IDVKIIGCDA MIRVESNKSN HPGARFMNAL MDLEVEVNHA SISVINHLMI  480
QQATVKMGLR NYTEEQLRAM LSSKVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-52	22	212	6	194	Transcription factor MYC3
4rqw_B	1e-52	22	212	6	194	Transcription factor MYC3
4rs9_A	1e-52	22	212	6	194	Transcription factor MYC3
4yz6_A	1e-52	22	212	6	194	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	330	KREKRRGRK
2	324	331	EKRRGRKP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00547	DAP	Transfer from AT5G46830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK31426.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398377.1	0.0	transcription factor bHLH28
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	A0A087GNH4	0.0	A0A087GNH4_ARAAL; Uncharacterized protein
STRING	A0A087GNH4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]