PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK31230.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 707aa MW: 77965.8 Da PI: 5.9054

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK31230.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00038	544	592	13	40
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK KFK31230.1 544 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 592 67799************53355555555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.5E-19	50	140	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	4.80E-4	525	582	No hit	No description
PROSITE profile	PS50888	11.28	531	580	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-4	544	593	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-5	544	586	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MELYIECSFK VLTLEDAYYD NHGQSNSPGV EGCSVIPKNT HGGHDPLGLA VAKMSYHVYS 60 LGEGIVGQVA VSGEHQWVFP EYYDHCHSPF EFHNVWESQI SAGIKTILVV AVGPCGVVQL 120 GSLCKVDEDV TLVNHIRHLF LALKDPLADH AANLMQCNMN DSLCLPKIPS ECLRVEAFPD 180 CSGEVDKAMN AAESNIVNQY KTRRSDSMHY NTPSSCLLTE KAAQIIGGHD VQVSTCGSYS 240 GVTFGFPTDL VDAKHENQVG TNIISDAPHV GMTSGCKDHP RGLDPNLHMY LKHHVFNNAS 300 SSEVERLMTG QSYPGLDSTF HASSRPDKEI SYGNEVFQLS ENQENKYLKE TERIQERKCE 360 SSRFDTLISS GYAFAGSELL EALGSGFMQT SSGHEELVKS EHGSAMRPTD DMSHSQLTFD 420 SARENLLDAM VANVCHSDGN AGDDMFSSRS VQSFLTSMEM AEPSGQRKHI AVNPIDSAMN 480 QLPLTEVDTQ QNPSDICGAF SSIGFSSTCP SSSSDQFQTS LEMPKKNKKR AKPGESSRPR 540 PRDRQLIQDR IKELRELVPN GSKCSIDSLL ERTIKHMLFL QNVTKHADKL SKSATTKMQQ 600 KETGTQGSSC AVEVGGHLQV SSIIVENLNK QGMVLIEMLC EECSHFLEIA NVIKSLDLVI 660 LRGVTETHGD KTWICFVVES QNNKVMQRMD ILWSLVQIFQ PKANGKR

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MELYIECSFK VLTLEDAYYD NHGQSNSPGV EGCSVIPKNT HGGHDPLGLA VAKMSYHVYS  60
LGEGIVGQVA VSGEHQWVFP EYYDHCHSPF EFHNVWESQI SAGIKTILVV AVGPCGVVQL  120
GSLCKVDEDV TLVNHIRHLF LALKDPLADH AANLMQCNMN DSLCLPKIPS ECLRVEAFPD  180
CSGEVDKAMN AAESNIVNQY KTRRSDSMHY NTPSSCLLTE KAAQIIGGHD VQVSTCGSYS  240
GVTFGFPTDL VDAKHENQVG TNIISDAPHV GMTSGCKDHP RGLDPNLHMY LKHHVFNNAS  300
SSEVERLMTG QSYPGLDSTF HASSRPDKEI SYGNEVFQLS ENQENKYLKE TERIQERKCE  360
SSRFDTLISS GYAFAGSELL EALGSGFMQT SSGHEELVKS EHGSAMRPTD DMSHSQLTFD  420
SARENLLDAM VANVCHSDGN AGDDMFSSRS VQSFLTSMEM AEPSGQRKHI AVNPIDSAMN  480
QLPLTEVDTQ QNPSDICGAF SSIGFSSTCP SSSSDQFQTS LEMPKKNKKR AKPGESSRPR  540
PRDRQLIQDR IKELRELVPN GSKCSIDSLL ERTIKHMLFL QNVTKHADKL SKSATTKMQQ  600
KETGTQGSSC AVEVGGHLQV SSIIVENLNK QGMVLIEMLC EECSHFLEIA NVIKSLDLVI  660
LRGVTETHGD KTWICFVVES QNNKVMQRMD ILWSLVQIFQ PKANGKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK31230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510215.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A087GMX8	0.0	A0A087GMX8_ARAAL; Uncharacterized protein
STRING	A0A087GMX8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]