PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK31189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 154aa MW: 17628.8 Da PI: 5.0042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.4e-06 | 39 | 79 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++++ L++l+ + +K + a++L +A++YI+ Lq KFK31189.1 39 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 79 67889999***********99.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-10 | 28 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.252 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-12 | 34 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-4 | 37 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.08E-6 | 39 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEYYRDSSEI MMENKRSVYS LEENNIKRHK SDHSSFSSKE RKDKVGERIS ALQQLVSPYG 60 KTDTASVLLE AMQYIQFLQE QVKVLSAPYL QTTDITTLEE LVEYSLRSRG LCLVPIEYTL 120 GVAQTNGADI WTPVKTPTSP TNFNLKYDDS SPFQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK31189.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410303.2 | 3e-85 | transcription factor bHLH153 isoform X2 | ||||
Swissprot | Q7XJU1 | 4e-83 | BH154_ARATH; Transcription factor bHLH154 | ||||
TrEMBL | A0A087GMT7 | 1e-110 | A0A087GMT7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GMT7 | 1e-111 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 2e-85 | bHLH family protein |