PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31025.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 203aa    MW: 22386 Da    PI: 7.5062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31025.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2057106356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+ aeeAa a+++a+ +++g+
  KFK31025.1  57 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDKAEEAALAYDKAAFEFRGH 106
                 9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-3856119IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2356114IPR016177DNA-binding domain
PfamPF008471.4E-1456106IPR001471AP2/ERF domain
CDDcd000182.64E-3456115No hitNo description
PROSITE profilePS5103224.31656113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3356114IPR001471AP2/ERF domain
PRINTSPR003672.5E-115768IPR001471AP2/ERF domain
PRINTSPR003672.5E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAGKGQEREE LCCCSTLSES DVSAFVSELT DQPTLPSIDP SLSLPPQEQN NSRQRNYRGV  60
RQRPWGKWAA EIRDPNKAAR VWLGTFDKAE EAALAYDKAA FEFRGHKAKL NFPEHILANS  120
THLNPLTATT ATSRDCIAVT PPPVVAPDIL LDQYGQFLPG NSESGASFTM TMSSSSSMDP  180
QGHRPKLEDG ENVKKSSTHK RRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2555113160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2552116166ATERF1
3gcc_A4e-2552116166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646798.13e-99ethylene-responsive transcription factor ERF112-like
RefseqXP_019101326.14e-99PREDICTED: ethylene-responsive transcription factor ERF112-like
SwissprotP930071e-82EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A087GMC31e-151A0A087GMC3_ARAAL; Uncharacterized protein
STRINGA0A087GMC31e-151(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-67ERF family protein