PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK30857.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

HB-other

Protein Properties

Length: 941aa MW: 105176 Da PI: 9.517

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30857.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.2	4.3e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g++ +qV+ +F ++++ +k KFK30857.1 66 KRPRDLLNPKAVKYLQAFFAIKDAISKKESREISALFGISVAQVREFFVTQKTRVRK 122 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.637	63	123	IPR001356	Homeobox domain
SMART	SM00389	5.3E-5	65	127	IPR001356	Homeobox domain
CDD	cd00086	9.73E-4	66	123	No hit	No description
SuperFamily	SSF46689	7.27E-6	66	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-4	66	131	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	2.4E-4	230	323	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	7.59E-5	233	325	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MDAFKEEIEI GSSVESLMEL LDSQKEIFHS QIDQLQDVVV MQCKLTGVNP LAQEMAAGAL 60 SIKIGKRPRD LLNPKAVKYL QAFFAIKDAI SKKESREISA LFGISVAQVR EFFVTQKTRV 120 RKQVRLSREK AIMSNTNGLL ENGVPESNGI NGTHIDPVPL NIAVAEPSSI SWSEGETVAP 180 MPQEDIPPDI SEADKYFVEN IFSLLRKEET FSGQVKLMEW MMQIQDSSVL IWFLSRGGVL 240 ILTTWLSQAA IEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRTSDISNRA 300 KGLLSRWTKL FAKIQAMKKQ NRNNSQIDSQ SQLLLKQSIA EIMDDNRNAE EILSLSNGRS 360 ENVRRIESSQ GPKLLLTSAD DSTKKHMLGA TSYNKERRKV QMVEQPGQKA AGRSPQTVRI 420 GTSGRSRPMS ADDIQKAKMR ALYMSKNTKK DPLPNAIGDS RTTVPEKPLA LQSAKDIVPE 480 KPLALQSAKD IVPEKPLALQ SAKDSPPTPS QTNEAKIEDT PEPSSLQAVN VPVQAEEYRK 540 PSTPPQTIAR KVAVLLKMSP QTILKNCKRK QIKWHVPPGM ELDELWRVAA GGNSKEADVQ 600 RNRNRRERET TYQSLQTIPL NPKEPWDREM DFDDSLTPEI RSEQLPEESI AEPQDSFDER 660 RTTAGAATTS SSQSGSSEPD LELLAALLKN PDLVYALTSG KPNNLVGQDM VKLLDVIKTG 720 VPNSNKKVEE KVEVSLPSPT PSTNPGMSGW GQEGIRNPFS RQIQVGAAVA RSSTQLHAAS 780 MQWQSTNDQS IPRHASPAYN SHTLPHTERQ QQQYMQPKLH HNQHLQQQQP ISTTSYTVRE 840 QVGQMGTATS SSWRSHQQNQ NSYYSHQANE IASASQASSY QGNNNNQYMS NNNPGFESWS 900 PDHSPSRNHP NMRGQQQQQQ PSRKHDSSST HPYWNQNKRW R

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MDAFKEEIEI GSSVESLMEL LDSQKEIFHS QIDQLQDVVV MQCKLTGVNP LAQEMAAGAL  60
SIKIGKRPRD LLNPKAVKYL QAFFAIKDAI SKKESREISA LFGISVAQVR EFFVTQKTRV  120
RKQVRLSREK AIMSNTNGLL ENGVPESNGI NGTHIDPVPL NIAVAEPSSI SWSEGETVAP  180
MPQEDIPPDI SEADKYFVEN IFSLLRKEET FSGQVKLMEW MMQIQDSSVL IWFLSRGGVL  240
ILTTWLSQAA IEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRTSDISNRA  300
KGLLSRWTKL FAKIQAMKKQ NRNNSQIDSQ SQLLLKQSIA EIMDDNRNAE EILSLSNGRS  360
ENVRRIESSQ GPKLLLTSAD DSTKKHMLGA TSYNKERRKV QMVEQPGQKA AGRSPQTVRI  420
GTSGRSRPMS ADDIQKAKMR ALYMSKNTKK DPLPNAIGDS RTTVPEKPLA LQSAKDIVPE  480
KPLALQSAKD IVPEKPLALQ SAKDSPPTPS QTNEAKIEDT PEPSSLQAVN VPVQAEEYRK  540
PSTPPQTIAR KVAVLLKMSP QTILKNCKRK QIKWHVPPGM ELDELWRVAA GGNSKEADVQ  600
RNRNRRERET TYQSLQTIPL NPKEPWDREM DFDDSLTPEI RSEQLPEESI AEPQDSFDER  660
RTTAGAATTS SSQSGSSEPD LELLAALLKN PDLVYALTSG KPNNLVGQDM VKLLDVIKTG  720
VPNSNKKVEE KVEVSLPSPT PSTNPGMSGW GQEGIRNPFS RQIQVGAAVA RSSTQLHAAS  780
MQWQSTNDQS IPRHASPAYN SHTLPHTERQ QQQYMQPKLH HNQHLQQQQP ISTTSYTVRE  840
QVGQMGTATS SSWRSHQQNQ NSYYSHQANE IASASQASSY QGNNNNQYMS NNNPGFESWS  900
PDHSPSRNHP NMRGQQQQQQ PSRKHDSSST HPYWNQNKRW R

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30857.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872830.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A087GLV5	0.0	A0A087GLV5_ARAAL; Luminidependens
STRING	A0A087GLV5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]