PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30745.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 499aa    MW: 55118.9 Da    PI: 6.6134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30745.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31241300159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  KFK30745.1 241 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 300
                 58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-33226302IPR003657WRKY domain
SuperFamilySSF1182908.11E-28234302IPR003657WRKY domain
PROSITE profilePS5081128.908236302IPR003657WRKY domain
SMARTSM007741.6E-37241301IPR003657WRKY domain
PfamPF031061.6E-26242300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEEQAQDRRE IAFLHSGEFL QGDFDSMDHQ PNESPVEHDH DHKPSIKEVD FFAAKIQPYD  60
IDHVRTTRIV GSSGFNDRLN LVNSRLGISS DDGDDKTKTQ ISRLKLELQR LHEENLKLKH  120
LVDEISESYN DLQSRVLLAR SQTQVEGPIK QHEDIIPQAV SQGLEDRRPM GMNNEVTATT  180
LKRRSPDDIN DRDLHQSSPK TPKLDQNKNT TSHEEQQSPH DQLPFRKARV SVRARSDATT  240
VNDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDTTILT TTYEGNHNHP  300
LPPSATAMAA TTSAAAAMLL SGSTTSNFHQ TLSSPSATSS APSFYHNFPY TSTIATLSAS  360
APFPTITLDL TNPPRLLQPP QPQPQFLSQY GPTAFLTNAN QIRSMNSNNN NNQQLSLPNM  420
FGPQAPQVPR DMVDTVRAAI AMDPNFTAAL AAAISNIMGG GNNNDNNNNN NNKVDEKSGG  480
SSNGDSPQLP QSCTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22228303175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879345.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A087GLJ30.0A0A087GLJ3_ARAAL; Uncharacterized protein
STRINGA0A087GLJ30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein