PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30632.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 375aa    MW: 42793.3 Da    PI: 10.4376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30632.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.3e-143989148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +g WT+e d+ll +av ++ g++Wk+Ia++++    +R + qc++rwqk+l
       KFK30632.1 39 KGGWTPEADKLLMNAVCRYKGKHWKKIAECVPgrkDKRRDVQCQHRWQKVL 89
                     688********************************89***********986 PP
2Myb_DNA-binding44.82.9e-1495144148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+ll ++vk    +    W+ I++ ++ gR +kqc++rw+++l
       KFK30632.1  95 KGPWSKEEDDLLSELVKANIENdkpKWSNISKQLP-GRIGKQCRERWHNHL 144
                      79***************98887888**********.*************97 PP
3Myb_DNA-binding50.35.5e-16150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+ +l++a   +G++ W+ Ia+ ++ gR+++++k++w+
       KFK30632.1 150 KTPWTSEEESILINAQMGHGNK-WAEIAKLLP-GRSENNIKNHWN 192
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3683489IPR017930Myb domain
SuperFamilySSF466892.24E-1637104IPR009057Homeodomain-like
SMARTSM007173.9E-93891IPR001005SANT/Myb domain
PfamPF002496.9E-123989IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1941105IPR009057Homeodomain-like
CDDcd001671.12E-74289No hitNo description
PROSITE profilePS5129426.76590148IPR017930Myb domain
SMARTSM007176.0E-1694146IPR001005SANT/Myb domain
CDDcd001672.30E-1097144No hitNo description
PfamPF139211.6E-1698159No hitNo description
Gene3DG3DSA:1.10.10.606.2E-24106151IPR009057Homeodomain-like
SuperFamilySSF466899.58E-28124201IPR009057Homeodomain-like
PROSITE profilePS5129418.251149199IPR017930Myb domain
SMARTSM007172.2E-14149197IPR001005SANT/Myb domain
CDDcd001673.31E-9152192No hitNo description
Gene3DG3DSA:1.10.10.604.3E-21152199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTKSNPSNFD IIDEVTPTFV IDSSRGCKRV SGPTRRSTKG GWTPEADKLL MNAVCRYKGK  60
HWKKIAECVP GRKDKRRDVQ CQHRWQKVLN PNLNKGPWSK EEDDLLSELV KANIENDKPK  120
WSNISKQLPG RIGKQCRERW HNHLNPTIKK TPWTSEEESI LINAQMGHGN KWAEIAKLLP  180
GRSENNIKNH WNCSVKKRLA QFPSSPISGS RSSSFESNLD NQGSIWNGML TSTSSHRGEK  240
EKLSSSIEFD WSRHSRKVAL PHWMPSSVLA NVLESPKTPQ SSNESVCIQE VKEIRERLRM  300
AASTFKNTPS IISKSSSPAS CLKRRRQQED TSFQTDCENE KEHSISNSPS SKSRPKHHIS  360
FGSKPLERRL EFDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-52421999159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-52421999159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009898.11e-144transcription factor MYB3R-2
SwissprotQ9SPN31e-139MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A087GL800.0A0A087GL80_ARAAL; Uncharacterized protein
STRINGA0A087GL800.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-120myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]